myRT

myRT report for GCA_002006325.1_ASM200632v1

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Seq: LZZJ01000230.1 Clostridium beijerinckii strain NRRL B-593 CLOBI_contig000230, whole genome shotgun sequence (28838 bp)
Overview 1 RT 1: 13325-21125 bp Neighborhood of RT #1 [13325, 21130] DUF1848 RVT-UG25 DUF1848 sensory_box PAS_9 sensory_box SpoIIE Feature: gene Location: 13325-14206 bp Ori: OOM55236.1 Feature: domain Description: DUF1848 Location: 13382-14192 bp Feature: domain Description: DUF1 848 Location: 1 3382-1 41 92 bp Feature: gene Location: 14507-14869 bp Feature: gene Location: 14983-17814 bp Ori: OOM55238.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 16288-16699 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 1 6288-1 6699 bp Feature: gene Location: 17999-18517 bp Ori: OOM55239.1 Feature: domain Description: DUF1848 Location: 18104-18488 bp Feature: domain Description: DUF1 848 Location: 1 81 04-1 8488 bp Feature: gene Location: 19307-21130 bp Ori: OOM55240.1 Gene: rsbU Feature: domain Description: sensory_box Location: 19370-19739 bp Feature: domain Description: sensory_box Location: 1 9370-1 9739 bp Feature: domain Description: PAS_9 Location: 19772-20060 bp Feature: domain Description: PAS_9 Location: 1 9772-20060 bp Feature: domain Description: sensory_box Location: 20093-20441 bp Feature: domain Description: sensory_box Location: 20093-20441 bp Feature: domain Description: SpoIIE Location: 20600-21125 bp Feature: domain Description: SpoIIE Location: 20600-21 1 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1848 (pfam08902), RVT-UG25, sensory_box (TIGR00229), PAS_9 (pfam13426), SpoIIE (pfam07228)

Seq: LZZJ01000225.1 Clostridium beijerinckii strain NRRL B-593 CLOBI_contig000225, whole genome shotgun sequence (29372 bp)
Overview 1 RT 1: 9923-15462 bp Neighborhood of RT #1 [9923, 15506] Recombinase Zn_ribbon_recom RVT-GII GIIM WrbA PucR Feature: gene Location: 9923-10612 bp Ori: OOM55622.1 Feature: domain Description: Recombinase Location: 10064-10382 bp Feature: domain Description: Recombinase Location: 10064-10382 bp Feature: domain Description: Zn_ribbon_recom Location: 10430-10544 bp Feature: domain Description: Zn_ribbon_recom Location: 10430-10544 bp Feature: gene Location: 10597-11067 bp Feature: gene Location: 11462-12877 bp Ori: OOM55624.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11819-12437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11819-12 437 bp Feature: domain Description: GIIM Note: maturase Location: 12488-12716 bp Feature: domain Description: GIIM Note: maturase Location: 12 488-12 716 bp Feature: gene Location: 13345-13908 bp Ori: OOM55625.1 Gene: ywqN_1 Feature: domain Description: WrbA Location: 13348-13708 bp Feature: domain Description: WrbA Location: 13348-13708 bp Feature: gene Location: 13932-15506 bp Ori: OOM55626.1 Gene: pucR_3 Feature: domain Description: PucR Location: 15039-15462 bp Feature: domain Description: PucR Location: 15039-15462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), WrbA (COG0655), PucR (pfam07905)