myRT

myRT report for GCA_002006345.1_ASM200634v1

Download annotations/find similar RTs

Seq: LZZM01000081.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000081, whole genome shotgun sequence (1889 bp)
Overview 1 RT 1: 78-1251 bp Neighborhood of RT #1 [78, 1325] RVT-GII GIIM Feature: gene Location: 78-1325 bp Ori: OOM80578.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1251 bp Feature: domain Description: GIIM Note: maturase Location: 1 020-1 251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LZZM01000061.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000061, whole genome shotgun sequence (4003 bp)
Overview 1 RT 1: 351-3520 bp Neighborhood of RT #1 [351, 3645] PriCT_1 COG3378 COG3183 RVT-GII Feature: gene Location: 351-893 bp Feature: gene Location: 1235-2563 bp Ori: OOM81646.1 Feature: domain Description: PriCT_1 Location: 1685-1838 bp Feature: domain Description: PriCT_1 Location: 1685-1838 bp Feature: domain Description: COG3378 Location: 2027-2318 bp Feature: domain Description: COG3378 Location: 2 02 7-2 318 bp Feature: domain Description: COG3183 Location: 2378-2471 bp Feature: domain Description: COG3183 Location: 2 378-2 471 bp Feature: gene Location: 2545-3645 bp Ori: OOM81647.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2902-3520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 -352 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PriCT_1 (smart00942), COG3378 (Phage- or plasmid-associated DNA primase ), COG3183 (Predicted restriction endonuclease, HNH family ), RVT-GII

Seq: LZZM01000238.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000238, whole genome shotgun sequence (18291 bp)
Overview 1 RT 1: 74-2907 bp Neighborhood of RT #1 [74, 2907] RVT-GII Rol_Rep_N Rep_trans Feature: gene Location: 74-1054 bp Ori: OOM70580.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 8-1016 bp Feature: gene Location: 1656-2213 bp Ori: OOM70581.1 Feature: domain Description: Rol_Rep_N Location: 1698-1965 bp Feature: domain Description: Rol_Rep_N Location: 1698-1965 bp Feature: domain Description: Rep_trans Location: 1989-2202 bp Feature: domain Description: Rep_trans Location: 1989-2202 bp Feature: gene Location: 2641-2907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: LZZM01000190.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000190, whole genome shotgun sequence (130619 bp)
Overview 1 RT 1: 74882-79742 bp Neighborhood of RT #1 [74882, 79742] CE4_COG5298 RVT-GII HNHc Feature: gene Location: 74882-76129 bp Ori: OOM75078.1 Feature: domain Description: CE4_COG5298 Location: 75269-75992 bp Feature: domain Description: CE4 _COG5298 Location: 75269-75992 bp Feature: gene Location: 76199-76303 bp Feature: gene Location: 77245-78297 bp Ori: OOM75080.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77566-78265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77566-78265 bp Feature: gene Location: 78366-79064 bp Ori: OOM75081.1 Feature: domain Description: HNHc Note: nucleases Location: 78804-78924 bp Feature: domain Description: HNHc Note: nucleases Location: 78804 -78924 bp Feature: gene Location: 79242-79742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_COG5298 (cd10923), RVT-GII, HNHc (smart00507)

Seq: LZZM01000063.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000063, whole genome shotgun sequence (97215 bp)
Overview 1 RT 1: 37429-47299 bp Neighborhood of RT #1 [37429, 47299] PG_binding_4 PG_binding_4 YkuD_like ALDH_YwdH-P39616 RVT-Retrons RVT-Retrons Feature: gene Location: 37429-38814 bp Ori: OOM81504.1 Feature: domain Description: PG_binding_4 Location: 37669-38002 bp Feature: domain Description: PG_binding_4 Location: 37669-38002 bp Feature: domain Description: PG_binding_4 Location: 38041-38377 bp Feature: domain Description: PG_binding_4 Location: 38041-38377 bp Feature: domain Description: YkuD_like Location: 38452-38803 bp Feature: domain Description: YkuD_like Location: 3845 2-38803 bp Feature: gene Location: 39045-40418 bp Ori: OOM81505.1 Gene: alkH Feature: domain Description: ALDH_YwdH-P39616 Location: 39060-40404 bp Feature: domain Description: ALDH_YwdH-P39616 Location: 39060-40404 bp Feature: gene Location: 40916-42493 bp Ori: OOM81506.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41552-41729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 415 5 2-41729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41816-42266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41816-42266 bp Feature: gene Location: 42490-44298 bp Feature: gene Location: 44288-47299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PG_binding_4 (pfam12229), YkuD_like (cl21614), ALDH_YwdH-P39616 (cd07136), RVT-Retrons

Seq: LZZM01000127.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000127, whole genome shotgun sequence (80308 bp)
Overview 1 RT 1: 7590-17543 bp Neighborhood of RT #1 [7590, 17599] PLDc_N_DEXD_b3 SSL2 AAA_15 TOPRIM_OLD RVT-Retrons RVT-Retrons YjbI Pentapeptide NERD HRDC HRDC Feature: gene Location: 7590-10130 bp Ori: OOM78318.1 Gene: uvrB_2 Feature: domain Description: PLDc_N_DEXD_b3 Location: 7713-8133 bp Feature: domain Description: PLDc_N_DEXD_b3 Location: 7713-8133 bp Feature: domain Description: SSL2 Location: 8235-9372 bp Feature: domain Description: SSL2 Location: 8235-9372 bp Feature: gene Location: 10532-12583 bp Ori: OOM78319.1 Gene: recF_2 Feature: domain Description: AAA_15 Location: 10535-11486 bp Feature: domain Description: AAA_15 Location: 10535-11486 bp Feature: domain Description: TOPRIM_OLD Location: 11627-11837 bp Feature: domain Description: TOPRIM_OLD Location: 116 27-11837 bp Feature: gene Location: 12840-13961 bp Ori: OOM78320.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13008-13137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13008-13137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13152-13611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13152-136 11 bp Feature: gene Location: 14092-15636 bp Ori: OOM78321.1 Feature: domain Description: YjbI Location: 14965-15346 bp Feature: domain Description: YjbI Location: 1496 5-15346 bp Feature: domain Description: Pentapeptide Location: 15364-15463 bp Feature: domain Description: Pentapeptide Location: 1536 4-1546 3 bp Feature: gene Location: 16172-17599 bp Ori: OOM78322.1 Gene: rnd Feature: domain Description: NERD Location: 16358-16709 bp Feature: domain Description: NERD Location: 16 358-16 709 bp Feature: domain Description: HRDC Location: 17072-17276 bp Feature: domain Description: HRDC Location: 17072-17276 bp Feature: domain Description: HRDC Location: 17360-17543 bp Feature: domain Description: HRDC Location: 1736 0-17543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_b3 (cd09205), SSL2 (COG1061), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, YjbI (COG2346), Pentapeptide (pfam00805), NERD (pfam08378), HRDC (smart00341)

Seq: LZZM01000058.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000058, whole genome shotgun sequence (4128 bp)
Overview 1 RT 1: 435-3991 bp Neighborhood of RT #1 [435, 4068] RVT-GII GIIM sialate_O-acetylesterase_like1 TPR Feature: gene Location: 435-1703 bp Ori: OOM81654.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-1269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1311-1542 bp Feature: domain Description: GIIM Note: maturase Location: 1311-1542 bp Feature: gene Location: 2589-3647 bp Ori: OOM81655.1 Feature: domain Description: sialate_O-acetylesterase_like1 Location: 3360-3639 bp Feature: domain Description: sialate_O-acetylesterase_like1 Location: 3360-3639 bp Feature: gene Location: 3667-4068 bp Ori: OOM81656.1 Feature: domain Description: TPR Location: 3775-3991 bp Feature: domain Description: TPR Location: 37 7 5-3991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), sialate_O-acetylesterase_like1 (cd01827), TPR (smart00028)

Seq: LZZM01000154.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000154, whole genome shotgun sequence (68140 bp)
Overview 1 RT 1: 51497-58477 bp Neighborhood of RT #1 [51497, 59172] PRK00955 RVT-GII PRK00955 CelA Feature: gene Location: 51497-51799 bp Ori: OOM77162.1 Feature: domain Description: PRK00955 Location: 51527-51776 bp Feature: domain Description: PRK00955 Location: 51527-51776 bp Feature: gene Location: 52369-52491 bp Feature: gene Location: 52813-54672 bp Ori: OOM77164.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53161-53860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53161-538 60 bp Feature: gene Location: 54818-56452 bp Ori: OOM77165.1 Gene: rimO_1 Feature: domain Description: PRK00955 Location: 54821-56357 bp Feature: domain Description: PRK00955 Location: 548 21-56357 bp Feature: gene Location: 56848-59172 bp Ori: OOM77166.1 Gene: bcsA Feature: domain Description: CelA Location: 56887-58477 bp Feature: domain Description: CelA Location: 568 8 7-58 477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00955 (YgiQ family radical SAM protein), RVT-GII, CelA (TIGR03030)

Seq: LZZM01000209.1 Clostridium puniceum strain DSM 2619 CLPUN_contig000209, whole genome shotgun sequence (33091 bp)
Overview 1 RT 1: 103-1853 bp Neighborhood of RT #1 [103, 1853] RVT-GII Intron_maturas2 HNHc Rep_trans Feature: gene Location: 103-999 bp Ori: OOM73798.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-277 bp Feature: domain Description: Intron_maturas2 Location: 352-703 bp Feature: domain Description: Intron_maturas2 Location: 352-703 bp Feature: domain Description: HNHc Note: nucleases Location: 820-970 bp Feature: domain Description: HNHc Note: nucleases Location: 820-9 70 bp Feature: gene Location: 1219-1578 bp Ori: OOM73799.1 Feature: domain Description: Rep_trans Location: 1234-1501 bp Feature: domain Description: Rep_trans Location: 1234-1501 bp Feature: gene Location: 1632-1853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Rep_trans (pfam02486)