myRT

myRT report for GCA_002006405.1_ASM200640v1

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Seq: LZZK01000004.1 Clostridium beijerinckii strain NRRL B-528 CLBEIC_contig000004, whole genome shotgun sequence (174296 bp)
Overview 1 RT 1: 14022-19537 bp Neighborhood of RT #1 [14022, 19605] PucR WrbA RVT-GII GIIM Recombinase Zn_ribbon_recom Feature: gene Location: 14022-15596 bp Ori: OOM72535.1 Gene: pucR_1 Feature: domain Description: PucR Location: 15129-15552 bp Feature: domain Description: PucR Location: 1 51 29-1 5552 bp Feature: gene Location: 15620-16183 bp Ori: OOM72536.1 Gene: ywqN_1 Feature: domain Description: WrbA Location: 15623-15983 bp Feature: domain Description: WrbA Location: 1 5623-1 5983 bp Feature: gene Location: 16651-18066 bp Ori: OOM72537.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17008-17626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7008-1 7626 bp Feature: domain Description: GIIM Note: maturase Location: 17677-17905 bp Feature: domain Description: GIIM Note: maturase Location: 1 7677-1 7905 bp Feature: gene Location: 18461-18931 bp Feature: gene Location: 18916-19605 bp Ori: OOM72539.1 Feature: domain Description: Recombinase Location: 19057-19375 bp Feature: domain Description: Recombinase Location: 1 9057-1 9375 bp Feature: domain Description: Zn_ribbon_recom Location: 19423-19537 bp Feature: domain Description: Zn_ribbon_recom Location: 1 9423-1 9537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucR (pfam07905), WrbA (COG0655), RVT-GII, GIIM (pfam08388), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: LZZK01000071.1 Clostridium beijerinckii strain NRRL B-528 CLBEIC_contig000071, whole genome shotgun sequence (28982 bp)
Overview 1 RT 1: 7781-15572 bp Neighborhood of RT #1 [7781, 15586] sensory_box PAS_9 sensory_box SpoIIE DUF1848 RVT-UG25 DUF1848 Feature: gene Location: 7781-9604 bp Ori: OOM66474.1 Gene: rsbU Feature: domain Description: sensory_box Location: 7844-8213 bp Feature: domain Description: sensory_box Location: 7844-82 13 bp Feature: domain Description: PAS_9 Location: 8246-8534 bp Feature: domain Description: PAS_9 Location: 82 46-8534 bp Feature: domain Description: sensory_box Location: 8567-8915 bp Feature: domain Description: sensory_box Location: 8567-8915 bp Feature: domain Description: SpoIIE Location: 9074-9599 bp Feature: domain Description: SpoIIE Location: 9074-9599 bp Feature: gene Location: 10394-10912 bp Ori: OOM66475.1 Feature: domain Description: DUF1848 Location: 10499-10883 bp Feature: domain Description: DUF1848 Location: 10499-10883 bp Feature: gene Location: 11097-13928 bp Ori: OOM66476.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 12402-12813 bp Feature: RT Description: RVT-UG2 5 Note: UG2 5 RT Location: 12 402 -12 813 bp Feature: gene Location: 14042-14404 bp Feature: gene Location: 14705-15586 bp Ori: OOM66478.1 Feature: domain Description: DUF1848 Location: 14762-15572 bp Feature: domain Description: DUF1848 Location: 14762 -15572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), PAS_9 (pfam13426), SpoIIE (pfam07228), DUF1848 (pfam08902), RVT-UG25