myRT

myRT report for GCA_002006435.1_ASM200643v1

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Seq: LZZB01000087.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000087, whole genome shotgun sequence (24233 bp)
Overview 1 RT 1: 20206-23765 bp Neighborhood of RT #1 [20206, 23875] PRK06811 RVT-GII HNHc Feature: gene Location: 20206-20751 bp Feature: domain Description: PRK06811 Location: 20209-20737 bp Feature: domain Description: PRK0681 1 Location: 20209-20737 bp Feature: gene Location: 21249-21338 bp Feature: gene Location: 22061-23875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22379-23078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22379-23078 bp Feature: domain Description: HNHc Note: nucleases Location: 23630-23765 bp Feature: domain Description: HNHc Note: nucleases Location: 23630-23765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06811 (RNA polymerase factor sigma-70; Validated), RVT-GII, HNHc (smart00507)

Seq: LZZB01000312.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000312, whole genome shotgun sequence (1526 bp)
Overview 1 RT 1: 109-1318 bp Neighborhood of RT #1 [109, 1428] RVT-GII HNHc Feature: gene Location: 109-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118-631 bp Feature: domain Description: HNHc Note: nucleases Location: 1186-1318 bp Feature: domain Description: HNHc Note: nucleases Location: 1186-1318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LZZB01000059.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000059, whole genome shotgun sequence (32530 bp)
Overview 1 RT 1: 2422-6510 bp Neighborhood of RT #1 [2422, 7964] MarR RVT-GII GIIM COG1373 Feature: gene Location: 2422-2934 bp Feature: domain Description: MarR Location: 2512-2854 bp Feature: domain Description: MarR Location: 2512-2854 bp Feature: gene Location: 3463-3768 bp Feature: gene Location: 3964-5277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4222-4915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4222-4915 bp Feature: domain Description: GIIM Note: maturase Location: 5002-5188 bp Feature: domain Description: GIIM Note: maturase Location: 5002-5188 bp Feature: gene Location: 5779-6273 bp Feature: gene Location: 6270-7964 bp Feature: domain Description: COG1373 Location: 6327-6510 bp Feature: domain Description: COG13 73 Location: 63 27-6510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: LZZB01000104.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000104, whole genome shotgun sequence (19279 bp)
Overview 1 RT 1: 14528-18238 bp Neighborhood of RT #1 [14528, 18348] YdeN RVT-GII HNHc Feature: gene Location: 14528-14650 bp Feature: gene Location: 14955-15524 bp Feature: domain Description: YdeN Location: 14964-15519 bp Feature: domain Description: YdeN Location: 14 964 -15519 bp Feature: gene Location: 16528-18348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16846-17551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684 6-17551 bp Feature: domain Description: HNHc Note: nucleases Location: 18106-18238 bp Feature: domain Description: HNHc Note: nucleases Location: 18106-18238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeN (COG3545), RVT-GII, HNHc (smart00507)

Seq: LZZB01000206.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000206, whole genome shotgun sequence (5517 bp)
Overview 1 RT 1: 433-4841 bp Neighborhood of RT #1 [433, 4870] RVT-GII TrmA Feature: gene Location: 433-2319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 1-145 6 bp Feature: gene Location: 3500-4870 bp Feature: domain Description: TrmA Location: 3515-4841 bp Feature: domain Description: TrmA Location: 35 15 -4841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmA (COG2265), RVT-GII

Seq: LZZB01000032.1 Clostridium beijerinckii strain NRRL B-596 CLOBE_contig000032, whole genome shotgun sequence (47194 bp)
Overview 1 RT 1: 125-13648 bp Neighborhood of RT #1 [125, 14262] RVT-GII GIIM GrsT PRK12467 PRK12467 mcbC-like_oxidoreductase PRK12467 Feature: gene Location: 125-1540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470-1088 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1373 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1373 bp Feature: gene Location: 2011-2718 bp Feature: domain Description: GrsT Location: 2020-2698 bp Feature: domain Description: GrsT Location: 2020-26 98 bp Feature: gene Location: 3301-14262 bp Feature: domain Description: PRK12467 Location: 3310-9070 bp Feature: domain Description: PRK1246 7 Location: 3310-9070 bp Feature: domain Description: PRK12467 Location: 9073-11578 bp Feature: domain Description: PRK1246 7 Location: 9073-11578 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 12037-12559 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 12037-12559 bp Feature: domain Description: PRK12467 Location: 12643-13648 bp Feature: domain Description: PRK1246 7 Location: 126 43-136 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GrsT (COG3208), PRK12467 (peptide synthase; Provisional), mcbC-like_oxidoreductase