myRT

myRT report for GCA_002006445.1_ASM200644v1

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Seq: LZZC01000200.1 Clostridium beijerinckii strain DSM 791 CLBEI_contig000200, whole genome shotgun sequence (2666 bp)
Overview 1 RT 1: 120-1824 bp Neighborhood of RT #1 [120, 1934] RVT-GII HNHc Feature: gene Location: 120-1934 bp Ori: OOM19272.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1 1 37 bp Feature: domain Description: HNHc Note: nucleases Location: 1689-1824 bp Feature: domain Description: HNHc Note: nucleases Location: 1 689-1 824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LZZC01000084.1 Clostridium beijerinckii strain DSM 791 CLBEI_contig000084, whole genome shotgun sequence (24809 bp)
Overview 1 RT 1: 1468-7064 bp Neighborhood of RT #1 [1468, 7064] GGGtGRT IscU RVT-UG2 COG4185 Feature: gene Location: 1468-2469 bp Ori: OOM21232.1 Feature: domain Description: GGGtGRT Location: 1480-2458 bp Feature: domain Description: GGGtGRT Location: 1480-2 458 bp Feature: gene Location: 2495-3187 bp Ori: OOM21233.1 Feature: domain Description: IscU Location: 2588-3008 bp Feature: domain Description: IscU Location: 2 588-3008 bp Feature: gene Location: 4521-5834 bp Ori: OOM21234.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4713-5535 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4713-5535 bp Feature: gene Location: 6325-6891 bp Ori: OOM21235.1 Feature: domain Description: COG4185 Location: 6328-6883 bp Feature: domain Description: COG4185 Location: 632 8-6883 bp Feature: gene Location: 6891-7064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGGtGRT (pfam14057), IscU (COG0822), RVT-UG2, COG4185 (Predicted ABC-type ATPase )

Seq: LZZC01000212.1 Clostridium beijerinckii strain DSM 791 CLBEI_contig000212, whole genome shotgun sequence (1870 bp)
Overview 1 RT 1: 439-1318 bp Neighborhood of RT #1 [439, 1353] RVT-GII Feature: gene Location: 439-1353 bp Ori: OOM19224.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-13 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LZZC01000062.1 Clostridium beijerinckii strain DSM 791 CLBEI_contig000062, whole genome shotgun sequence (33518 bp)
Overview 1 RT 1: 10720-23818 bp Neighborhood of RT #1 [10720, 23823] RVT-UG5 COG0610 RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 Feature: gene Location: 10720-13203 bp Feature: gene Location: 13353-14285 bp Feature: gene Location: 14304-18038 bp Ori: OOM22325.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14763-15210 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14 763-15210 bp Feature: gene Location: 19365-22451 bp Ori: OOM22326.1 Gene: hsdR_2 Feature: domain Description: COG0610 Location: 19392-21807 bp Feature: domain Description: COG0610 Location: 19392-21807 bp Feature: gene Location: 22543-23823 bp Ori: OOM22327.1 Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 22753-23206 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 22753-23206 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 23263-23818 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 23263-23818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278)

Seq: LZZC01000210.1 Clostridium beijerinckii strain DSM 791 CLBEI_contig000210, whole genome shotgun sequence (1930 bp)
Overview 1 RT 1: 88-1342 bp Neighborhood of RT #1 [88, 1503] RVT-GII GIIM Feature: gene Location: 88-1503 bp Ori: OOM19230.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-1063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445 -1063 bp Feature: domain Description: GIIM Note: maturase Location: 1114-1342 bp Feature: domain Description: GIIM Note: maturase Location: 1114-1342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)