myRT

myRT report for GCA_002006525.1_ASM200652v1

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Seq: MTJV01000046.1 Escherichia coli strain 3431F LABRESIS_jan2017_E.coli_3431F_contig_45, whole genome shotgun sequence (21071 bp)
Overview 1 RT 1: 15963-20577 bp Neighborhood of RT #1 [15963, 20577] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 15963-16994 bp Ori: OOM82987.1 Feature: domain Description: LacI Location: 16005-16140 bp Feature: domain Description: LacI Location: 1 6005-1 61 40 bp Feature: domain Description: PBP1_GntR Location: 16179-16989 bp Feature: domain Description: PBP1 _GntR Location: 1 61 79-1 6989 bp Feature: gene Location: 17254-17445 bp Feature: gene Location: 17719-18327 bp Ori: OOM82992.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17722-18085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7722-1 8085 bp Feature: domain Description: GIIM Note: maturase Location: 18133-18325 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 33-1 8325 bp Feature: gene Location: 18345-18779 bp Ori: OOM82988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18537-18753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8537-1 8753 bp Feature: gene Location: 19676-20014 bp Feature: gene Location: 20224-20577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: MTJV01000035.1 Escherichia coli strain 3431F LABRESIS_jan2017_E.coli_3431F_contig_34, whole genome shotgun sequence (65803 bp)
Overview 1 RT 1: 46585-51330 bp Neighborhood of RT #1 [46585, 51344] XdhC PBP2_CrgA_like_5 RVT-Retrons PinE Feature: gene Location: 46585-47541 bp Ori: OOM83357.1 Feature: domain Description: XdhC Location: 46663-47518 bp Feature: domain Description: XdhC Location: 46663-47518 bp Feature: gene Location: 47520-47930 bp Ori: OOM83358.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 47592-47904 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 47592 -47904 bp Feature: gene Location: 48433-50268 bp Ori: OOM83359.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48568-49264 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48568-492 64 bp Feature: gene Location: 50602-50673 bp Feature: gene Location: 50790-51344 bp Feature: domain Description: PinE Location: 50793-51330 bp Feature: domain Description: PinE Location: 50793-51330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-Retrons, PinE (COG1961)

Seq: MTJV01000020.1 Escherichia coli strain 3431F LABRESIS_jan2017_E.coli_3431F_contig_19, whole genome shotgun sequence (67542 bp)
Overview 1 RT 1: 53857-62145 bp Neighborhood of RT #1 [53857, 62540] RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Feature: gene Location: 53857-54108 bp Feature: gene Location: 54143-54568 bp Feature: gene Location: 54522-56045 bp Ori: OOM84300.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54795-55527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54795-55527 bp Feature: domain Description: GIIM Note: maturase Location: 55602-55800 bp Feature: domain Description: GIIM Note: maturase Location: 55602-55800 bp Feature: gene Location: 56120-56584 bp Ori: OOM84301.1 Feature: domain Description: PHA02517 Location: 56129-56576 bp Feature: domain Description: PHA02517 Location: 56129-56576 bp Feature: gene Location: 56805-62540 bp Ori: OOM84302.1 Feature: domain Description: DUF4011 Location: 56895-57729 bp Feature: domain Description: DUF4011 Location: 56895-57729 bp Feature: domain Description: DEXXQc_SF1 Location: 58086-61188 bp Feature: domain Description: DEXXQc_SF1 Location: 58086-61188 bp Feature: domain Description: SF1_C_Upf1 Location: 61197-61725 bp Feature: domain Description: SF1_C_Upf1 Location: 61197-61725 bp Feature: domain Description: MTES_1575 Location: 61854-62145 bp Feature: domain Description: MTES_1575 Location: 61854-62145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)