myRT

myRT report for GCA_002007235.1_ASM200723v1

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Seq: MUHW01000025.1 Oribacterium sp. C9 NODE_25_length_62980_cov_648.914_ID_8173, whole genome shotgun sequence (62980 bp)
Overview 1 RT 1: 17694-27526 bp Neighborhood of RT #1 [17694, 27549] PFL2_DhaB_BssA PFLE_PFLC RVT-UG26 NHLM_micro_ABC1 NHLM_micro_ABC2 Feature: gene Location: 17694-20177 bp Ori: OON85135.1 Feature: domain Description: PFL2_DhaB_BssA Location: 17793-20166 bp Feature: domain Description: PFL2_DhaB_BssA Location: 1 7793-201 66 bp Feature: gene Location: 20354-21304 bp Ori: OON85136.1 Feature: domain Description: PFLE_PFLC Location: 20375-21251 bp Feature: domain Description: PFLE_PFLC Location: 20375-21 251 bp Feature: gene Location: 21768-23006 bp Ori: OON85137.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 21981-22599 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 21 981 -22599 bp Feature: gene Location: 23183-25372 bp Ori: OON85138.1 Feature: domain Description: NHLM_micro_ABC1 Location: 23198-25364 bp Feature: domain Description: NHLM_micro_ABC1 Location: 231 98-25364 bp Feature: gene Location: 25378-27549 bp Ori: OON85139.1 Feature: domain Description: NHLM_micro_ABC2 Location: 25594-27526 bp Feature: domain Description: NHLM_micro_ABC2 Location: 25594-27526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFL2_DhaB_BssA (cd01677), PFLE_PFLC (TIGR02494), RVT-UG26, NHLM_micro_ABC1 (TIGR03796), NHLM_micro_ABC2 (TIGR03797)

Seq: MUHW01000003.1 Oribacterium sp. C9 NODE_3_length_183364_cov_610.328_ID_8129, whole genome shotgun sequence (183364 bp)
Overview 1 RT 1: 49635-51688 bp Neighborhood of RT #1 [49635, 51699] Phage_XkdX RVT-DGRs HTH_3 HTH_XRE Feature: gene Location: 49635-49757 bp Feature: domain Description: Phage_XkdX Location: 49641-49758 bp Feature: domain Description: Phage_XkdX Location: 49641-49758 bp Feature: gene Location: 49770-50126 bp Feature: gene Location: 50074-50919 bp Ori: OON87649.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50077-50650 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50077-50650 bp Feature: gene Location: 51237-51440 bp Ori: OON87650.1 Feature: domain Description: HTH_3 Location: 51276-51429 bp Feature: domain Description: HTH_3 Location: 512 76-5142 9 bp Feature: gene Location: 51511-51699 bp Ori: OON87651.1 Feature: domain Description: HTH_XRE Location: 51532-51688 bp Feature: domain Description: HTH_XRE Location: 51532 -51688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, HTH_3 (pfam01381), HTH_XRE (smart00530)

Seq: MUHW01000054.1 Oribacterium sp. C9 NODE_54_length_1853_cov_4497.26_ID_8231, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 65-1175 bp Neighborhood of RT #1 [65, 1348] RVT-GII GIIM Feature: gene Location: 65-1348 bp Ori: OON84678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-884 bp Feature: domain Description: GIIM Note: maturase Location: 944-1175 bp Feature: domain Description: GIIM Note: maturase Location: 944-1175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)