myRT

myRT report for GCA_002009885.1_ASM200988v1

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Seq: MWMH01000004.1 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF04, whole genome shotgun sequence (604572 bp)
Overview 1 RT 1: 368409-374008 bp Neighborhood of RT #1 [368409, 374040] PBP1_GGBP COG2703 RVT-GII GIIM CheW Tar Feature: gene Location: 368409-369460 bp Feature: domain Description: PBP1_GGBP Location: 368523-369114 bp Feature: domain Description: PBP1 _GGBP Location: 368523-3691 1 4 bp Feature: gene Location: 369704-370096 bp Feature: domain Description: COG2703 Location: 369707-370091 bp Feature: domain Description: COG2703 Location: 369707-370091 bp Feature: gene Location: 370572-371987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370929-371547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370929-371 547 bp Feature: domain Description: GIIM Note: maturase Location: 371598-371826 bp Feature: domain Description: GIIM Note: maturase Location: 371 598-371 826 bp Feature: gene Location: 372221-372656 bp Feature: domain Description: CheW Location: 372236-372617 bp Feature: domain Description: CheW Location: 372236-37261 7 bp Feature: gene Location: 372640-374040 bp Feature: domain Description: Tar Location: 372994-374008 bp Feature: domain Description: Tar Location: 372994-374008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_GGBP (cd01539), COG2703 (Hemerythrin ), RVT-GII, GIIM (pfam08388), CheW (smart00260), Tar (COG0840)

Seq: MWMH01000001.1 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF01, whole genome shotgun sequence (1193148 bp)
Overview 1 RT 1: 388279-394737 bp 2 RT 2: 784701-788707 bp Neighborhood of RT #1 [388279, 394757] KOG2566 PLN03080 RVT-GII GIIM PRK15098 SGNH_hydrolase_YpmR_like Neighborhood of RT #2 [784701, 788709] HTH_3 COG4584 COG4584 PRK09183 RVT-GII GIIM TPR TPR Feature: gene Location: 388279-389604 bp Feature: domain Description: KOG2566 Location: 388369-389599 bp Feature: domain Description: KOG2 566 Location: 388369-389599 bp Feature: gene Location: 389662-390021 bp Feature: domain Description: PLN03080 Location: 389704-390022 bp Feature: domain Description: PLN03080 Location: 389704-39002 2 bp Feature: gene Location: 390767-392032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390980-391601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390980-391601 bp Feature: domain Description: GIIM Note: maturase Location: 391643-391874 bp Feature: domain Description: GIIM Note: maturase Location: 391643-391874 bp Feature: gene Location: 392132-393898 bp Feature: domain Description: PRK15098 Location: 392135-393833 bp Feature: domain Description: PRK15098 Location: 392 135-393833 bp Feature: gene Location: 393972-394757 bp Feature: domain Description: SGNH_hydrolase_YpmR_like Location: 394146-394737 bp Feature: domain Description: SGNH_hydrolase_YpmR_like Location: 394146-394737 bp Feature: gene Location: 784701-785996 bp Feature: domain Description: HTH_3 Location: 784797-784896 bp Feature: domain Description: HTH_3 Location: 784797-784896 bp Feature: domain Description: COG4584 Location: 784905-785076 bp Feature: domain Description: COG4584 Location: 784905-785076 bp Feature: domain Description: COG4584 Location: 785118-785508 bp Feature: domain Description: COG4584 Location: 785118-785508 bp Feature: gene Location: 785989-786741 bp Feature: domain Description: PRK09183 Location: 785992-786727 bp Feature: domain Description: PRK09183 Location: 785992 -78672 7 bp Feature: gene Location: 786839-787795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786845-787412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786845-787412 bp Feature: domain Description: GIIM Note: maturase Location: 787463-787697 bp Feature: domain Description: GIIM Note: maturase Location: 787463-787697 bp Feature: gene Location: 788094-788447 bp Feature: domain Description: TPR Location: 788106-788379 bp Feature: domain Description: TPR Location: 788106-788379 bp Feature: gene Location: 788434-788709 bp Feature: domain Description: TPR Location: 788452-788707 bp Feature: domain Description: TPR Location: 788452 -788707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2566 (KOG2566, Beta-glucocerebrosidase ), PLN03080 (Probable beta-xylosidase; Provisional), RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX), SGNH_hydrolase_YpmR_like (cd04506), HTH_3 (pfam01381), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), TPR (smart00028)

Seq: MWMH01000005.1 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF05, whole genome shotgun sequence (413361 bp)
Overview 1 RT 1: 320616-325772 bp Neighborhood of RT #1 [320616, 325783] Phage_rep_org_N DnaD_dom PRK06921 RVT-GII HNHc spore_V_T DUF2922 Feature: gene Location: 320616-321803 bp Feature: domain Description: Phage_rep_org_N Location: 320634-320991 bp Feature: domain Description: Phage_rep_org_N Location: 3 2063 4-3 20991 bp Feature: domain Description: DnaD_dom Location: 321561-321651 bp Feature: domain Description: DnaD_dom Location: 3 21561-3 21651 bp Feature: gene Location: 321838-322452 bp Feature: domain Description: PRK06921 Location: 321871-322420 bp Feature: domain Description: PRK06921 Location: 3 21871-3 22420 bp Feature: gene Location: 323203-324957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323461-324160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 461-3 24160 bp Feature: domain Description: HNHc Note: nucleases Location: 324733-324835 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2473 3 -3 2483 5 bp Feature: gene Location: 325181-325423 bp Feature: domain Description: spore_V_T Location: 325187-325328 bp Feature: domain Description: spore_V_T Location: 3 25187-3 253 28 bp Feature: gene Location: 325565-325783 bp Feature: domain Description: DUF2922 Location: 325580-325772 bp Feature: domain Description: DUF2922 Location: 3 25580-3 25772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_rep_org_N (pfam09681), DnaD_dom (TIGR01446), PRK06921 (hypothetical protein; Provisional), RVT-GII, HNHc (smart00507), spore_V_T (TIGR02851), DUF2922 (pfam11148)

Seq: MWMH01000007.1 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF07, whole genome shotgun sequence (339772 bp)
Overview 1 RT 1: 119807-125348 bp Neighborhood of RT #1 [119807, 125500] Bro-N ANT AbrB RVT-GII HNHc PRK06921 Phage_rep_org_N DnaD_dom Feature: gene Location: 119807-120562 bp Feature: domain Description: Bro-N Location: 119849-120131 bp Feature: domain Description: Bro-N Location: 11984 9-120131 bp Feature: domain Description: ANT Location: 120245-120557 bp Feature: domain Description: ANT Location: 12024 5-120557 bp Feature: gene Location: 120617-120859 bp Feature: domain Description: AbrB Location: 120620-120818 bp Feature: domain Description: AbrB Location: 120620-120818 bp Feature: gene Location: 121099-122853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121357-122056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121357-122056 bp Feature: domain Description: HNHc Note: nucleases Location: 122629-122731 bp Feature: domain Description: HNHc Note: nucleases Location: 122629-122731 bp Feature: gene Location: 123604-124218 bp Feature: domain Description: PRK06921 Location: 123628-124186 bp Feature: domain Description: PRK06921 Location: 123628-124 186 bp Feature: gene Location: 124253-125500 bp Feature: domain Description: Phage_rep_org_N Location: 124271-124631 bp Feature: domain Description: Phage_rep_org_N Location: 124 271-124 631 bp Feature: domain Description: DnaD_dom Location: 125258-125348 bp Feature: domain Description: DnaD_dom Location: 125258-12534 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bro-N (smart01040), ANT (pfam03374), AbrB (pfam05145), RVT-GII, HNHc (smart00507), PRK06921 (hypothetical protein; Provisional), Phage_rep_org_N (pfam09681), DnaD_dom (TIGR01446)

Seq: MWMH01000002.1 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF02, whole genome shotgun sequence (829829 bp)
Overview 1 RT 1: 342082-346352 bp Neighborhood of RT #1 [342082, 346360] HTH_XRE RVT-Retrons COG3440 Feature: gene Location: 342082-342276 bp Feature: gene Location: 342354-342644 bp Feature: domain Description: HTH_XRE Location: 342372-342528 bp Feature: domain Description: HTH_XRE Location: 342372-3425 28 bp Feature: gene Location: 342637-343566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342799-343324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342799-343324 bp Feature: gene Location: 343769-344614 bp Feature: gene Location: 344756-346360 bp Feature: domain Description: COG3440 Location: 345899-346352 bp Feature: domain Description: COG3440 Location: 345 899-34635 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, COG3440 (Predicted restriction endonuclease )