myRT

myRT report for GCA_002012325.1_ASM201232v1

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Seq: CP019576.1 Clostridium perfringens strain Del1 genome (3559163 bp)
Overview 1 RT 1: 1969359-1976983 bp Neighborhood of RT #1 [1969359, 1977093] Trypsin_2 ComEC ComEC RVT-GII Intron_maturas2 HNHc PRK09219 TPR TPR Feature: gene Location: 1969359-1970714 bp Feature: domain Description: Trypsin_2 Location: 1969437-1969926 bp Feature: domain Description: Trypsin_2 Location: 1 969437-1 969926 bp Feature: gene Location: 1970715-1971677 bp Feature: domain Description: ComEC Location: 1970781-1970985 bp Feature: domain Description: ComEC Location: 1 970781 -1 970985 bp Feature: domain Description: ComEC Location: 1971258-1971483 bp Feature: domain Description: ComEC Location: 1 971 258-1 971 483 bp Feature: gene Location: 1972063-1973865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972327-1973146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 972327-1 9731 46 bp Feature: domain Description: Intron_maturas2 Location: 1973227-1973569 bp Feature: domain Description: Intron_maturas2 Location: 1 973227-1 973569 bp Feature: domain Description: HNHc Note: nucleases Location: 1973689-1973836 bp Feature: domain Description: HNHc Note: nucleases Location: 1 973689-1 973836 bp Feature: gene Location: 1975353-1975931 bp Feature: domain Description: PRK09219 Location: 1975356-1975929 bp Feature: domain Description: PRK0921 9 Location: 1 975356-1 975929 bp Feature: gene Location: 1976104-1977093 bp Feature: domain Description: TPR Location: 1976296-1976578 bp Feature: domain Description: TPR Location: 1 976296-1 976578 bp Feature: domain Description: TPR Location: 1976740-1976983 bp Feature: domain Description: TPR Location: 1 976740-1 976983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), ComEC (COG2333), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09219 (xanthine phosphoribosyltransferase; Validated), TPR (smart00028)

Seq: CP019578.1 Clostridium perfringens strain Del1 plasmid pDel1_2, complete sequence (69827 bp)
Overview 1 RT 1: 22833-30025 bp Neighborhood of RT #1 [22833, 30066] AAA_10 FlgJ Spr RVT-GII RVT-GII Intron_maturas2 YdjM Feature: gene Location: 22833-23480 bp Feature: domain Description: AAA_10 Location: 22842-23436 bp Feature: domain Description: AAA_10 Location: 2 2 842 -2 3436 bp Feature: gene Location: 23481-24377 bp Feature: domain Description: FlgJ Location: 23592-24069 bp Feature: domain Description: FlgJ Location: 2 3592 -2 4069 bp Feature: domain Description: Spr Location: 24084-24369 bp Feature: domain Description: Spr Location: 2 4084-2 4369 bp Feature: gene Location: 24932-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25196-25499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5196-2 5499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25886-26012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5886-2 6012 bp Feature: domain Description: Intron_maturas2 Location: 26093-26435 bp Feature: domain Description: Intron_maturas2 Location: 2 6093-2 6435 bp Feature: gene Location: 27059-29569 bp Feature: gene Location: 29572-30066 bp Feature: domain Description: YdjM Location: 29575-30025 bp Feature: domain Description: YdjM Location: 2 9575-3002 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), FlgJ (COG1705), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), YdjM (pfam04307)

Seq: CP019580.1 Clostridium perfringens strain Del1 plasmid pDel1_4, complete sequence (49728 bp)
Overview 1 RT 1: 21047-30105 bp Neighborhood of RT #1 [21047, 30146] AAA_10 FlgJ Spr RVT-GII KOG4768 YdjM Feature: gene Location: 21047-23572 bp Feature: domain Description: AAA_10 Location: 22496-23528 bp Feature: domain Description: AAA_10 Location: 22496-23 528 bp Feature: gene Location: 23572-24468 bp Feature: domain Description: FlgJ Location: 23683-24160 bp Feature: domain Description: FlgJ Location: 23 683 -24160 bp Feature: domain Description: Spr Location: 24175-24460 bp Feature: domain Description: Spr Location: 24175-24460 bp Feature: gene Location: 25023-26822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25287-26106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25287-26106 bp Feature: domain Description: KOG4768 Location: 26760-26817 bp Feature: domain Description: KOG4768 Location: 26760-26817 bp Feature: gene Location: 27151-29649 bp Feature: gene Location: 29652-30146 bp Feature: domain Description: YdjM Location: 29655-30105 bp Feature: domain Description: YdjM Location: 29655-3 0105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), FlgJ (COG1705), Spr (COG0791), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), YdjM (pfam04307)