myRT

myRT report for GCA_002014005.1_ASM201400v1

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Seq: MSBZ01000030.1 Vibrio parahaemolyticus strain MVP4 Contigs30, whole genome shotgun sequence (81864 bp)
Overview 1 RT 1: 1-3703 bp 2 RT 2: 8586-15000 bp Neighborhood of RT #1 [1, 3717] RVT-Retrons UvrD UvrD UvrD Neighborhood of RT #2 [8586, 15035] COG4190 HTH_XRE RVT-Retrons PRK05658 dnaG Feature: gene Location: 1-388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256-385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256-385 bp Feature: gene Location: 554-1819 bp Feature: gene Location: 2071-3717 bp Feature: domain Description: UvrD Location: 2134-2395 bp Feature: domain Description: UvrD Location: 21 34-2395 bp Feature: domain Description: UvrD Location: 2458-3172 bp Feature: domain Description: UvrD Location: 2458-31 72 bp Feature: domain Description: UvrD Location: 3364-3703 bp Feature: domain Description: UvrD Location: 3364-3703 bp Feature: gene Location: 8586-8966 bp Feature: domain Description: COG4190 Location: 8601-8928 bp Feature: domain Description: COG41 90 Location: 8601 -8928 bp Feature: gene Location: 9545-9850 bp Feature: domain Description: HTH_XRE Location: 9560-9722 bp Feature: domain Description: HTH_XRE Location: 9560-9722 bp Feature: gene Location: 9831-10790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10005-10560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0005-1 0560 bp Feature: gene Location: 11313-13175 bp Feature: domain Description: PRK05658 Location: 11319-13173 bp Feature: domain Description: PRK05658 Location: 1 1 31 9-1 31 73 bp Feature: gene Location: 13275-15035 bp Feature: domain Description: dnaG Location: 13284-15000 bp Feature: domain Description: dnaG Location: 1 3284-1 5000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210), PRK05658 (RNA polymerase sigma factor RpoD; Validated), dnaG (TIGR01391), COG4190 (Predicted transcriptional regulator ), HTH_XRE (smart00530)