myRT

myRT report for GCA_002014925.1_ASM201492v1

Download annotations/find similar RTs

Seq: MUXQ01000032.1 Streptococcus pseudopneumoniae strain CCUG 62647 CCUG62647_R1__paired__trimmed__paired__contig_32, whole genome shotgun sequence (20782 bp)
Overview 1 RT 1: 11690-19062 bp Neighborhood of RT #1 [11690, 19070] rexB_recomb INT_ICEBs1_C_like RVT-GII GIIM eno Feature: gene Location: 11690-14965 bp Ori: OOR80384.1 Feature: domain Description: rexB_recomb Location: 11696-14918 bp Feature: domain Description: rexB_recomb Location: 1 1 696-1 491 8 bp Feature: gene Location: 15424-15783 bp Ori: OOR80379.1 Feature: domain Description: INT_ICEBs1_C_like Location: 15454-15718 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 5454-1 571 8 bp Feature: gene Location: 15867-17144 bp Ori: OOR80380.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16071-16686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6071 -1 6686 bp Feature: domain Description: GIIM Note: maturase Location: 16740-16953 bp Feature: domain Description: GIIM Note: maturase Location: 1 6740-1 6953 bp Feature: gene Location: 17510-17734 bp Feature: gene Location: 17766-19070 bp Ori: OOR80381.1 Feature: domain Description: eno Location: 17769-19062 bp Feature: domain Description: eno Location: 1 7769-1 9062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rexB_recomb (TIGR02774), INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), eno (TIGR01060)

Seq: MUXQ01000022.1 Streptococcus pseudopneumoniae strain CCUG 62647 CCUG62647_R1__paired__trimmed__paired__contig_22, whole genome shotgun sequence (54227 bp)
Overview 1 RT 1: 51607-54224 bp Neighborhood of RT #1 [51607, 54227] COG4466 COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 RVT-GII Feature: gene Location: 51607-51873 bp Ori: OOR81782.1 Feature: domain Description: COG4466 Location: 51622-51871 bp Feature: domain Description: COG4466 Location: 5162 2 -51871 bp Feature: gene Location: 51962-53080 bp Ori: OOR81783.1 Feature: domain Description: COG3942 Location: 51968-52616 bp Feature: domain Description: COG3942 Location: 51968-52 616 bp Feature: domain Description: CW_binding_1 Location: 52793-52841 bp Feature: domain Description: CW_binding_1 Location: 52 793-52 841 bp Feature: domain Description: CW_binding_1 Location: 52850-52904 bp Feature: domain Description: CW_binding_1 Location: 52 850-52 904 bp Feature: domain Description: CW_binding_1 Location: 52910-52964 bp Feature: domain Description: CW_binding_1 Location: 52 910-52 964 bp Feature: domain Description: CW_binding_1 Location: 52970-53021 bp Feature: domain Description: CW_binding_1 Location: 52 970-5302 1 bp Feature: gene Location: 53855-54227 bp Ori: OOR81784.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54059-54224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54059-542 2 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4466 (Uncharacterized protein Veg, DUF1021 family ), COG3942 (Surface antigen ), CW_binding_1 (pfam01473), RVT-GII

Seq: MUXQ01000033.1 Streptococcus pseudopneumoniae strain CCUG 62647 CCUG62647_R1__paired__trimmed__paired__contig_33, whole genome shotgun sequence (678 bp)
Overview 1 RT 1: 306-675 bp Neighborhood of RT #1 [306, 678] RVT-GII Feature: gene Location: 306-678 bp Ori: OOR80095.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUXQ01000011.1 Streptococcus pseudopneumoniae strain CCUG 62647 CCUG62647_R1__paired__trimmed__paired__contig_11, whole genome shotgun sequence (49324 bp)
Overview 1 RT 1: 24285-28497 bp Neighborhood of RT #1 [24285, 28499] YneF HTH_29 RVT-GII PRK00106 Feature: gene Location: 24285-24533 bp Ori: OOR83094.1 Feature: domain Description: YneF Location: 24288-24498 bp Feature: domain Description: YneF Location: 24 288-24 4 98 bp Feature: gene Location: 24692-25399 bp Feature: domain Description: HTH_29 Location: 24737-24908 bp Feature: domain Description: HTH_29 Location: 24 737-24 908 bp Feature: gene Location: 25501-26182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25705-25834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25705-25834 bp Feature: gene Location: 26778-26990 bp Feature: gene Location: 26886-28499 bp Ori: OOR83096.1 Feature: domain Description: PRK00106 Location: 26895-28497 bp Feature: domain Description: PRK00106 Location: 26895-284 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YneF (COG3763), HTH_29 (pfam13551), RVT-GII, PRK00106 (ribonuclease Y)

Seq: MUXQ01000048.1 Streptococcus pseudopneumoniae strain CCUG 62647 CCUG62647_R1__paired__trimmed__paired__contig_48, whole genome shotgun sequence (989 bp)
Overview 1 RT 1: 8-734 bp Neighborhood of RT #1 [8, 924] RVT-GII GIIM Feature: gene Location: 8-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-467 bp Feature: domain Description: GIIM Note: maturase Location: 521-734 bp Feature: domain Description: GIIM Note: maturase Location: 5 21-734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)