myRT

myRT report for GCA_002014955.1_ASM201495v1

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Seq: MUXR01000083.1 Streptococcus pseudopneumoniae strain CCUG 63747 CCUG63747_R1__paired__trimmed__paired__contig_83, whole genome shotgun sequence (735 bp)
Overview 1 RT 1: 3-480 bp Neighborhood of RT #1 [3, 670] RVT-GII GIIM Feature: gene Location: 3-670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-21 3 bp Feature: domain Description: GIIM Note: maturase Location: 267-480 bp Feature: domain Description: GIIM Note: maturase Location: 267-480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUXR01000018.1 Streptococcus pseudopneumoniae strain CCUG 63747 CCUG63747_R1__paired__trimmed__paired__contig_18, whole genome shotgun sequence (20479 bp)
Overview 1 RT 1: 1104-9047 bp Neighborhood of RT #1 [1104, 9094] YueI eno RVT-GII GIIM INT_ICEBs1_C_like rexB_recomb Feature: gene Location: 1104-1550 bp Ori: OOR85870.1 Feature: domain Description: YueI Location: 1107-1539 bp Feature: domain Description: YueI Location: 1107-1539 bp Feature: gene Location: 1714-3018 bp Ori: OOR85871.1 Feature: domain Description: eno Location: 1717-3010 bp Feature: domain Description: eno Location: 1717-3010 bp Feature: gene Location: 3640-4917 bp Ori: OOR85872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844-4459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844-4459 bp Feature: domain Description: GIIM Note: maturase Location: 4513-4726 bp Feature: domain Description: GIIM Note: maturase Location: 4513-472 6 bp Feature: gene Location: 5001-5360 bp Ori: OOR85873.1 Feature: domain Description: INT_ICEBs1_C_like Location: 5031-5295 bp Feature: domain Description: INT_ICEBs1_C_like Location: 5031-52 95 bp Feature: gene Location: 5819-9094 bp Ori: OOR85874.1 Feature: domain Description: rexB_recomb Location: 5825-9047 bp Feature: domain Description: rexB_recomb Location: 582 5-9047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YueI (COG5506), eno (TIGR01060), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), rexB_recomb (TIGR02774)

Seq: MUXR01000024.1 Streptococcus pseudopneumoniae strain CCUG 63747 CCUG63747_R1__paired__trimmed__paired__contig_24, whole genome shotgun sequence (54397 bp)
Overview 1 RT 1: 1-2788 bp Neighborhood of RT #1 [1, 2790] RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 1-542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-3 3 4 bp Feature: gene Location: 1317-2435 bp Ori: OOR84999.1 Feature: domain Description: COG3942 Location: 1323-1971 bp Feature: domain Description: COG3 942 Location: 13 23 -1971 bp Feature: domain Description: CW_binding_1 Location: 2148-2196 bp Feature: domain Description: CW_binding_1 Location: 2148-2196 bp Feature: domain Description: CW_binding_1 Location: 2205-2259 bp Feature: domain Description: CW_binding_1 Location: 2205-2259 bp Feature: domain Description: CW_binding_1 Location: 2265-2319 bp Feature: domain Description: CW_binding_1 Location: 2265-23 19 bp Feature: domain Description: CW_binding_1 Location: 2325-2376 bp Feature: domain Description: CW_binding_1 Location: 23 25-23 76 bp Feature: gene Location: 2524-2790 bp Ori: OOR85000.1 Feature: domain Description: COG4466 Location: 2539-2788 bp Feature: domain Description: COG4466 Location: 253 9-2788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3942 (Surface antigen ), CW_binding_1 (pfam01473), COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: MUXR01000025.1 Streptococcus pseudopneumoniae strain CCUG 63747 CCUG63747_R1__paired__trimmed__paired__contig_25, whole genome shotgun sequence (24379 bp)
Overview 1 RT 1: 139-3468 bp Neighborhood of RT #1 [139, 3509] RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 139-820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 3-4 72 bp Feature: gene Location: 1524-3137 bp Ori: OOR84968.1 Feature: domain Description: PRK00106 Location: 1533-3135 bp Feature: domain Description: PRK00106 Location: 1533-3135 bp Feature: gene Location: 3189-3509 bp Ori: OOR84969.1 Feature: domain Description: SR_TndX_transposase Location: 3213-3468 bp Feature: domain Description: SR_TndX_transposase Location: 3213-34 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00106 (ribonuclease Y), SR_TndX_transposase (cd03770)

Seq: MUXR01000021.1 Streptococcus pseudopneumoniae strain CCUG 63747 CCUG63747_R1__paired__trimmed__paired__contig_21, whole genome shotgun sequence (934 bp)
Overview 1 RT 1: 1-628 bp Neighborhood of RT #1 [1, 628] RVT-GII Feature: gene Location: 1-628 bp Ori: OOR85759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 -628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII