myRT

myRT report for GCA_002015545.1_ASM201554v1

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Seq: MVMQ01000016.1 Escherichia coli strain UMDKSU-2014-5-650B NODE_15_length_126576_cov_31.3687_ID_19029, whole genome shotgun sequence (126576 bp)
Overview 1 RT 1: 45970-50075 bp Neighborhood of RT #1 [45970, 50075] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 45970-46380 bp Feature: gene Location: 46600-47001 bp Feature: domain Description: DUF932 Location: 46711-46993 bp Feature: domain Description: DUF932 Location: 4671 1 -46993 bp Feature: gene Location: 47493-49271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47754-48549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47754-48549 bp Feature: domain Description: Intron_maturas2 Location: 48675-48900 bp Feature: domain Description: Intron_maturas2 Location: 48675-48900 bp Feature: domain Description: HNHc Note: nucleases Location: 49095-49245 bp Feature: domain Description: HNHc Note: nucleases Location: 49095-49245 bp Feature: gene Location: 49444-49830 bp Feature: domain Description: DUF932 Location: 49450-49795 bp Feature: domain Description: DUF932 Location: 49450-49795 bp Feature: gene Location: 49830-50075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MVMQ01000043.1 Escherichia coli strain UMDKSU-2014-5-650B NODE_42_length_39289_cov_29.1253_ID_19083, whole genome shotgun sequence (39289 bp)
Overview 1 RT 1: 28291-32016 bp Neighborhood of RT #1 [28291, 32016] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 28291-28587 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: domain Description: InsE Location: 2 82 94-2 8582 bp Feature: gene Location: 28772-29011 bp Feature: domain Description: PHA02517 Location: 28775-28946 bp Feature: domain Description: PHA02 517 Location: 2 8775-2 8946 bp Feature: gene Location: 29603-31126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9876-30608 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: gene Location: 31303-31689 bp Feature: domain Description: PHA02517 Location: 31306-31687 bp Feature: domain Description: PHA02 517 Location: 31306-31687 bp Feature: gene Location: 31885-32016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)