myRT

myRT report for GCA_002015935.1_ASM201593v1

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Seq: MVMH01000039.1 Escherichia coli strain UMDKSU-2014-5-140E NODE_39_length_39289_cov_38.8808_ID_19795, whole genome shotgun sequence (39289 bp)
Overview 1 RT 1: 28291-32016 bp Neighborhood of RT #1 [28291, 32016] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 28291-28587 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: gene Location: 28772-29011 bp Feature: domain Description: PHA02517 Location: 28775-28946 bp Feature: domain Description: PHA0251 7 Location: 28775-28946 bp Feature: gene Location: 29603-31126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: gene Location: 31303-31689 bp Feature: domain Description: PHA02517 Location: 31306-31687 bp Feature: domain Description: PHA0251 7 Location: 31 306-31 687 bp Feature: gene Location: 31885-32016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MVMH01000007.1 Escherichia coli strain UMDKSU-2014-5-140E NODE_7_length_198561_cov_41.0572_ID_19731, whole genome shotgun sequence (198561 bp)
Overview 1 RT 1: 117955-122060 bp Neighborhood of RT #1 [117955, 122060] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 117955-118365 bp Feature: gene Location: 118585-118986 bp Feature: domain Description: DUF932 Location: 118696-118978 bp Feature: domain Description: DUF932 Location: 118696-118978 bp Feature: gene Location: 119478-121256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119739-120534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119739-12 0534 bp Feature: domain Description: Intron_maturas2 Location: 120660-120885 bp Feature: domain Description: Intron_maturas2 Location: 12 0660-12 0885 bp Feature: domain Description: HNHc Note: nucleases Location: 121080-121230 bp Feature: domain Description: HNHc Note: nucleases Location: 12 1080-12 12 30 bp Feature: gene Location: 121429-121815 bp Feature: domain Description: DUF932 Location: 121435-121780 bp Feature: domain Description: DUF932 Location: 12 1435-12 1780 bp Feature: gene Location: 121815-122060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)