myRT

myRT report for GCA_002015975.1_ASM201597v1

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Seq: MVMG01000021.1 Escherichia coli strain UMDKSU-2014-5-139D NODE_21_length_81301_cov_42.1828_ID_19590, whole genome shotgun sequence (81301 bp)
Overview 1 RT 1: 695-4800 bp Neighborhood of RT #1 [695, 4800] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 695-1105 bp Feature: gene Location: 1325-1726 bp Feature: domain Description: DUF932 Location: 1436-1718 bp Feature: domain Description: DUF932 Location: 1 436-1 71 8 bp Feature: gene Location: 2218-3996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479-3274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479-3274 bp Feature: domain Description: Intron_maturas2 Location: 3400-3625 bp Feature: domain Description: Intron_maturas2 Location: 3400-3625 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3970 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3970 bp Feature: gene Location: 4169-4555 bp Feature: domain Description: DUF932 Location: 4175-4520 bp Feature: domain Description: DUF932 Location: 41 75-4520 bp Feature: gene Location: 4555-4800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MVMG01000041.1 Escherichia coli strain UMDKSU-2014-5-139D NODE_41_length_39289_cov_39.2596_ID_19630, whole genome shotgun sequence (39289 bp)
Overview 1 RT 1: 28291-32016 bp Neighborhood of RT #1 [28291, 32016] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 28291-28587 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: domain Description: InsE Location: 2 82 94-2 8582 bp Feature: gene Location: 28772-29011 bp Feature: domain Description: PHA02517 Location: 28775-28946 bp Feature: domain Description: PHA02 517 Location: 2 8775-2 8946 bp Feature: gene Location: 29603-31126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9876-30608 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: gene Location: 31303-31689 bp Feature: domain Description: PHA02517 Location: 31306-31687 bp Feature: domain Description: PHA02 517 Location: 31306-31687 bp Feature: gene Location: 31885-32016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)