myRT

myRT report for GCA_002016065.1_ASM201606v1

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Seq: MVMO01000015.1 Escherichia coli strain UMDKSU-2014-5-611A NODE_15_length_125543_cov_71.8157_ID_19478, whole genome shotgun sequence (125543 bp)
Overview 1 RT 1: 44937-49042 bp Neighborhood of RT #1 [44937, 49042] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 44937-45347 bp Feature: gene Location: 45567-45968 bp Feature: domain Description: DUF932 Location: 45678-45960 bp Feature: domain Description: DUF932 Location: 45678-45960 bp Feature: gene Location: 46460-48238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46721-47516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46721 -4751 6 bp Feature: domain Description: Intron_maturas2 Location: 47642-47867 bp Feature: domain Description: Intron_maturas2 Location: 47642-47867 bp Feature: domain Description: HNHc Note: nucleases Location: 48062-48212 bp Feature: domain Description: HNHc Note: nucleases Location: 48062-4821 2 bp Feature: gene Location: 48411-48797 bp Feature: domain Description: DUF932 Location: 48417-48762 bp Feature: domain Description: DUF932 Location: 4841 7-48762 bp Feature: gene Location: 48797-49042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MVMO01000041.1 Escherichia coli strain UMDKSU-2014-5-611A NODE_41_length_39289_cov_69.5422_ID_19530, whole genome shotgun sequence (39289 bp)
Overview 1 RT 1: 28291-32016 bp Neighborhood of RT #1 [28291, 32016] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 28291-28587 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: domain Description: InsE Location: 2 82 94-2 8582 bp Feature: gene Location: 28772-29011 bp Feature: domain Description: PHA02517 Location: 28775-28946 bp Feature: domain Description: PHA02 517 Location: 2 8775-2 8946 bp Feature: gene Location: 29603-31126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9876-30608 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: gene Location: 31303-31689 bp Feature: domain Description: PHA02517 Location: 31306-31687 bp Feature: domain Description: PHA02 517 Location: 31306-31687 bp Feature: gene Location: 31885-32016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)