myRT

myRT report for GCA_002016075.1_ASM201607v1

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Seq: MVMR01000040.1 Escherichia coli strain UMDKSU-2014-5-655A NODE_40_length_39289_cov_30.1689_ID_20179, whole genome shotgun sequence (39289 bp)
Overview 1 RT 1: 28291-32016 bp Neighborhood of RT #1 [28291, 32016] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 28291-28587 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: domain Description: InsE Location: 28294-28582 bp Feature: gene Location: 28772-29011 bp Feature: domain Description: PHA02517 Location: 28775-28946 bp Feature: domain Description: PHA0251 7 Location: 28775-28946 bp Feature: gene Location: 29603-31126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29876-30608 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: domain Description: GIIM Note: maturase Location: 30683-30881 bp Feature: gene Location: 31303-31689 bp Feature: domain Description: PHA02517 Location: 31306-31687 bp Feature: domain Description: PHA0251 7 Location: 31 306-31 687 bp Feature: gene Location: 31885-32016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MVMR01000007.1 Escherichia coli strain UMDKSU-2014-5-655A NODE_7_length_198561_cov_33.19_ID_20113, whole genome shotgun sequence (198561 bp)
Overview 1 RT 1: 76502-80607 bp Neighborhood of RT #1 [76502, 80607] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 76502-76747 bp Feature: gene Location: 76747-77133 bp Feature: domain Description: DUF932 Location: 76753-77098 bp Feature: domain Description: DUF932 Location: 76753-77098 bp Feature: gene Location: 77306-79084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77567-78362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77567-78362 bp Feature: domain Description: Intron_maturas2 Location: 78488-78713 bp Feature: domain Description: Intron_maturas2 Location: 78488-78713 bp Feature: domain Description: HNHc Note: nucleases Location: 78908-79058 bp Feature: domain Description: HNHc Note: nucleases Location: 78908-79058 bp Feature: gene Location: 79576-79977 bp Feature: domain Description: DUF932 Location: 79687-79969 bp Feature: domain Description: DUF932 Location: 79687-79969 bp Feature: gene Location: 80197-80607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)