myRT

myRT report for GCA_002016085.1_ASM201608v1

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Seq: MVMP01000021.1 Escherichia coli strain UMDKSU-2014-5-614A NODE_21_length_81301_cov_26.5059_ID_20059, whole genome shotgun sequence (81301 bp)
Overview 1 RT 1: 695-4800 bp Neighborhood of RT #1 [695, 4800] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 695-1105 bp Feature: gene Location: 1325-1726 bp Feature: domain Description: DUF932 Location: 1436-1718 bp Feature: domain Description: DUF932 Location: 1 436-1 71 8 bp Feature: gene Location: 2218-3996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479-3274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2479-3274 bp Feature: domain Description: Intron_maturas2 Location: 3400-3625 bp Feature: domain Description: Intron_maturas2 Location: 3400-3625 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3970 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3970 bp Feature: gene Location: 4169-4555 bp Feature: domain Description: DUF932 Location: 4175-4520 bp Feature: domain Description: DUF932 Location: 41 75-4520 bp Feature: gene Location: 4555-4800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MVMP01000052.1 Escherichia coli strain UMDKSU-2014-5-614A NODE_52_length_25438_cov_30.0506_ID_20121, whole genome shotgun sequence (25438 bp)
Overview 1 RT 1: 7274-10453 bp Neighborhood of RT #1 [7274, 10518] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 7274-7405 bp Feature: gene Location: 7601-8047 bp Feature: domain Description: PHA02517 Location: 7604-8045 bp Feature: domain Description: PHA02 517 Location: 7604-8045 bp Feature: gene Location: 8164-9687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-9169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-9169 bp Feature: domain Description: GIIM Note: maturase Location: 9244-9442 bp Feature: domain Description: GIIM Note: maturase Location: 92 44-9442 bp Feature: gene Location: 9641-10066 bp Feature: gene Location: 10279-10518 bp Feature: domain Description: PHA02517 Location: 10282-10453 bp Feature: domain Description: PHA02 517 Location: 102 82 -10453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)