myRT

myRT report for GCA_002018825.1_ASM201882v1

Download annotations/find similar RTs

Seq: MWIS01000029.1 Escherichia coli strain ICBECAM12 Contig_165, whole genome shotgun sequence (52089 bp)
Overview 1 RT 1: 14310-19154 bp Neighborhood of RT #1 [14310, 19154] dsdC PRK09921 RVT-GII GIIM Feature: gene Location: 14310-15254 bp Ori: OOW27105.1 Feature: domain Description: dsdC Location: 14334-15231 bp Feature: domain Description: dsdC Location: 1 4334-1 5231 bp Feature: gene Location: 15472-16839 bp Ori: OOW27078.1 Feature: domain Description: PRK09921 Location: 15475-16660 bp Feature: domain Description: PRK09921 Location: 1 5475-1 6660 bp Feature: gene Location: 16966-18489 bp Ori: OOW27079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17239-17971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7239-1 7971 bp Feature: domain Description: GIIM Note: maturase Location: 18046-18244 bp Feature: domain Description: GIIM Note: maturase Location: 1 8046-1 8244 bp Feature: gene Location: 18443-18868 bp Feature: gene Location: 18903-19154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dsdC (TIGR02036), PRK09921 (permease DsdX; Provisional), RVT-GII, GIIM (pfam08388)

Seq: MWIS01000075.1 Escherichia coli strain ICBECAM12 Contig_37, whole genome shotgun sequence (17839 bp)
Overview 1 RT 1: 13460-16996 bp Neighborhood of RT #1 [13460, 17648] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 13460-13732 bp Ori: OOW21996.1 Feature: domain Description: PRK09678 Location: 13469-13625 bp Feature: domain Description: PRK09678 Location: 13469-1362 5 bp Feature: gene Location: 14378-15346 bp Feature: gene Location: 15348-16280 bp Ori: OOW21998.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15450-16044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15450-16044 bp Feature: gene Location: 16536-16721 bp Feature: gene Location: 16735-17648 bp Feature: domain Description: Arm-DNA-bind_3 Location: 16744-16996 bp Feature: domain Description: Arm-DNA-bind_3 Location: 16744-16996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)