myRT

myRT report for GCA_002018845.1_ASM201884v1

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Seq: MVOJ01000037.1 Pseudomonas sp. MF6394 contig037, whole genome shotgun sequence (78221 bp)
Overview 1 RT 1: 46973-51853 bp Neighborhood of RT #1 [46973, 51853] Acetyltransf_3 RVT-Retrons Feature: gene Location: 46973-47488 bp Feature: domain Description: Acetyltransf_3 Location: 47015-47420 bp Feature: domain Description: Acetyltransf_3 Location: 4701 5-47420 bp Feature: gene Location: 48083-48877 bp Feature: gene Location: 48874-49827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48985-49579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48985-49579 bp Feature: gene Location: 50048-50665 bp Feature: gene Location: 50747-51853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_3 (pfam13302), RVT-Retrons

Seq: MVOJ01000039.1 Pseudomonas sp. MF6394 contig039, whole genome shotgun sequence (72965 bp)
Overview 1 RT 1: 5035-9049 bp Neighborhood of RT #1 [5035, 9060] IS5 RVT-GII GIIM IS5 PRK10431 PRK10319 Feature: gene Location: 5035-5574 bp Feature: domain Description: IS5 Location: 5224-5551 bp Feature: domain Description: IS5 Location: 52 2 4-5551 bp Feature: gene Location: 5583-5678 bp Feature: gene Location: 6067-7335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6280-6937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 80-6937 bp Feature: domain Description: GIIM Note: maturase Location: 7015-7237 bp Feature: domain Description: GIIM Note: maturase Location: 7015-72 37 bp Feature: gene Location: 7368-7865 bp Feature: domain Description: IS5 Location: 7395-7839 bp Feature: domain Description: IS5 Location: 7395-7839 bp Feature: gene Location: 7999-9060 bp Feature: domain Description: PRK10431 Location: 8065-8431 bp Feature: domain Description: PRK10431 Location: 8065-8431 bp Feature: domain Description: PRK10319 Location: 8461-9049 bp Feature: domain Description: PRK10319 Location: 8461-9049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA)

Seq: MVOJ01000002.1 Pseudomonas sp. MF6394 contig002, whole genome shotgun sequence (384726 bp)
Overview 1 RT 1: 92157-97011 bp Neighborhood of RT #1 [92157, 97031] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C ACR3 Feature: gene Location: 92157-93464 bp Feature: domain Description: LZ_Tnp_IS66 Location: 92289-92496 bp Feature: domain Description: LZ_Tnp_IS66 Location: 92289-92496 bp Feature: domain Description: zf-IS66 Location: 92535-92649 bp Feature: domain Description: zf-IS66 Location: 9253 5-92649 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92691-93465 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92691-93 465 bp Feature: gene Location: 93798-94013 bp Feature: gene Location: 94043-95704 bp Feature: RT Description: RVT_N Location: 94088-94331 bp Feature: RT Description: RVT_N Location: 94088-943 3 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94376-95012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943 76-95012 bp Feature: domain Description: GIIM Note: maturase Location: 95069-95297 bp Feature: domain Description: GIIM Note: maturase Location: 95069-95297 bp Feature: gene Location: 95809-96030 bp Feature: domain Description: DDE_Tnp_IS66 Location: 95815-95881 bp Feature: domain Description: DDE_Tnp_IS66 Location: 95815-95881 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 95902-96013 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 95902-96013 bp Feature: gene Location: 96069-97031 bp Feature: domain Description: ACR3 Location: 96084-97011 bp Feature: domain Description: ACR3 Location: 96084-97011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)