myRT

myRT report for GCA_002019645.1_ASM201964v1

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Seq: KV917374.1 Bacillus alkalitelluris strain DSM 16976 genomic scaffold Scaffold1, whole genome shotgun sequence (5426306 bp)
Overview 1 RT 1: 60897-66120 bp 2 RT 2: 2680266-2686074 bp 3 RT 3: 3243239-3251828 bp 4 RT 4: 4194336-4197894 bp 5 RT 5: 4914748-4918295 bp Neighborhood of RT #1 [60897, 66120] HomoserineK_II WxL RVT-GII GIIM group_II_RT_mat Neighborhood of RT #2 [2680266, 2686094] Gnd RVT-GII GIIM COG1878 PRK05722 Neighborhood of RT #3 [3243239, 3252694] Nudix_Hydrolase group_II_RT_mat HNHc RVT-GII GIIM RVT-GII MDR1 DUF1565 Beta_helix Neighborhood of RT #4 [4194336, 4197894] AraC_binding adjacent_YSIRK RVT-GII GIIM Neighborhood of RT #5 [4914748, 4918327] spore_yhbH AraJ RVT-GII RimL Feature: gene Location: 60897-61517 bp Feature: domain Description: HomoserineK_II Location: 61041-61515 bp Feature: domain Description: HomoserineK_II Location: 61 041 -61 51 5 bp Feature: gene Location: 61947-62552 bp Feature: domain Description: WxL Location: 62169-62550 bp Feature: domain Description: WxL Location: 621 69-62550 bp Feature: gene Location: 62792-63787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62795-63353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62795-63353 bp Feature: domain Description: GIIM Note: maturase Location: 63410-63638 bp Feature: domain Description: GIIM Note: maturase Location: 6341 0-63638 bp Feature: gene Location: 63846-64133 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 63969-64128 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 63969-641 28 bp Feature: gene Location: 64645-66120 bp Feature: gene Location: 2680266-2681678 bp Feature: domain Description: Gnd Location: 2680269-2681673 bp Feature: domain Description: Gnd Location: 2680269-2681 673 bp Feature: gene Location: 2681745-2681939 bp Feature: gene Location: 2682218-2683492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682419-2683034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268241 9-2683034 bp Feature: domain Description: GIIM Note: maturase Location: 2683094-2683304 bp Feature: domain Description: GIIM Note: maturase Location: 2683094-2683304 bp Feature: gene Location: 2683950-2684573 bp Feature: domain Description: COG1878 Location: 2683953-2684553 bp Feature: domain Description: COG1 878 Location: 2683953-2684553 bp Feature: gene Location: 2684592-2686094 bp Feature: domain Description: PRK05722 Location: 2684607-2686074 bp Feature: domain Description: PRK05722 Location: 2684607-2686074 bp Feature: gene Location: 3243239-3243607 bp Feature: domain Description: Nudix_Hydrolase Location: 3243251-3243548 bp Feature: domain Description: Nudix_Hydrolase Location: 3243251 -3243548 bp Feature: gene Location: 3243807-3244736 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3243819-3244179 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 324381 9-32441 79 bp Feature: domain Description: HNHc Note: nucleases Location: 3244473-3244608 bp Feature: domain Description: HNHc Note: nucleases Location: 3244473-3244608 bp Feature: gene Location: 3244852-3246180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3245140-3245791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32451 40-3245791 bp Feature: domain Description: GIIM Note: maturase Location: 3245875-3246094 bp Feature: domain Description: GIIM Note: maturase Location: 3245875-3246094 bp Feature: gene Location: 3246611-3247447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246869-3247421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246869-3247421 bp Feature: gene Location: 3248386-3249345 bp Feature: domain Description: MDR1 Location: 3248407-3249334 bp Feature: domain Description: MDR1 Location: 3248407-3249334 bp Feature: gene Location: 3250670-3252694 bp Feature: domain Description: DUF1565 Location: 3250694-3250808 bp Feature: domain Description: DUF1 565 Location: 3250694-3250808 bp Feature: domain Description: Beta_helix Location: 3251384-3251828 bp Feature: domain Description: Beta_helix Location: 3251 384-3251 828 bp Feature: gene Location: 4194336-4194464 bp Feature: gene Location: 4194498-4195337 bp Feature: domain Description: AraC_binding Location: 4194585-4194960 bp Feature: domain Description: AraC_binding Location: 41 94585-41 94960 bp Feature: domain Description: adjacent_YSIRK Location: 4195020-4195323 bp Feature: domain Description: adjacent_YSIRK Location: 41 95020-41 95323 bp Feature: gene Location: 4195530-4196804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195731-4196346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 95731 -41 96346 bp Feature: domain Description: GIIM Note: maturase Location: 4196406-4196616 bp Feature: domain Description: GIIM Note: maturase Location: 41 96406-41 9661 6 bp Feature: gene Location: 4197083-4197277 bp Feature: gene Location: 4197625-4197894 bp Feature: gene Location: 4914748-4914930 bp Feature: domain Description: spore_yhbH Location: 4914763-4914898 bp Feature: domain Description: spore_yhbH Location: 491 4763-491 4898 bp Feature: gene Location: 4915110-4916279 bp Feature: domain Description: AraJ Location: 4915152-4916253 bp Feature: domain Description: AraJ Location: 491 51 52-491 6253 bp Feature: gene Location: 4916699-4917163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4916900-4917143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 6900-491 71 43 bp Feature: gene Location: 4917442-4917636 bp Feature: gene Location: 4917746-4918327 bp Feature: domain Description: RimL Location: 4917803-4918295 bp Feature: domain Description: RimL Location: 491 7803-491 8295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HomoserineK_II (cd05153), WxL (pfam13731), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), Gnd (COG0362), COG1878 (Kynurenine formamidase ), PRK05722 (glucose-6-phosphate 1-dehydrogenase; Validated), Nudix_Hydrolase (cl00447), HNHc (smart00507)
MDR1 (cd08267), DUF1565 (pfam07602), Beta_helix (pfam13229), AraC_binding (pfam02311), adjacent_YSIRK (TIGR04094), spore_yhbH (TIGR02877), AraJ (COG2814), RimL (COG1670)