myRT

myRT report for GCA_002019695.1_ASM201969v1

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Seq: KV917376.1 [Bacillus] clarkii strain DSM 8720 genomic scaffold Scaffold1, whole genome shotgun sequence (5224402 bp)
Overview 1 RT 1: 422582-427827 bp 2 RT 2: 1302719-1307179 bp 3 RT 3: 1620701-1626330 bp 4 RT 4: 1967551-1977289 bp 5 RT 5: 2014764-2021832 bp 6 RT 6: 2752267-2757629 bp 7 RT 7: 3047729-3052822 bp 8 RT 8: 4339165-4343889 bp 9 RT 9: 4653368-4658414 bp Neighborhood of RT #1 [422582, 427871] MATE_MepA_like HTH_MARR RVT-GII GIIM Dps Mn_catalase Neighborhood of RT #2 [1302719, 1307179] RVT-GII GIIM Neighborhood of RT #3 [1620701, 1626344] 2-Hacid_dh_1 RVT-GII GIIM AlsT GlnQ Neighborhood of RT #4 [1967551, 1977297] CwlO1 Peptidase_M23 prc PG_binding_1 RVT-GII GIIM PDZ_serine_protease PRK05298 Neighborhood of RT #5 [2014764, 2021849] YvaK RNase_R RVT-GII GIIM DUF326 smpB Neighborhood of RT #6 [2752267, 2757649] DapD_Ac M20_Acy1_YkuR-like RVT-GII GIIM PRK03094 MscS Neighborhood of RT #7 [3047729, 3052839] COG3333 RVT-GII GIIM PRK00215 PRK14125 Neighborhood of RT #8 [4339165, 4343889] AmpC DUF4395 RVT-GII GIIM YflT Neighborhood of RT #9 [4653368, 4658428] spore_III_AA RVT-GII GIIM PRK00529 PepP Feature: gene Location: 422582-423991 bp Feature: domain Description: MATE_MepA_like Location: 422639-423911 bp Feature: domain Description: MATE_MepA_like Location: 422639-42391 1 bp Feature: gene Location: 423997-424446 bp Feature: domain Description: HTH_MARR Location: 424081-424378 bp Feature: domain Description: HTH_MARR Location: 424081 -424378 bp Feature: gene Location: 424775-425488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424778-425066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424778-425066 bp Feature: domain Description: GIIM Note: maturase Location: 425120-425333 bp Feature: domain Description: GIIM Note: maturase Location: 4251 20-425333 bp Feature: gene Location: 426331-426768 bp Feature: domain Description: Dps Location: 426340-426763 bp Feature: domain Description: Dps Location: 426340-426763 bp Feature: gene Location: 427011-427871 bp Feature: domain Description: Mn_catalase Location: 427014-427827 bp Feature: domain Description: Mn_catalase Location: 42701 4-427827 bp Feature: gene Location: 1302719-1303345 bp Feature: gene Location: 1303574-1303756 bp Feature: gene Location: 1304411-1305661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1304621-1305239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 304621 -1 305239 bp Feature: domain Description: GIIM Note: maturase Location: 1305296-1305506 bp Feature: domain Description: GIIM Note: maturase Location: 1 305296-1 305506 bp Feature: gene Location: 1305798-1306397 bp Feature: gene Location: 1306484-1307179 bp Feature: gene Location: 1620701-1621645 bp Feature: domain Description: 2-Hacid_dh_1 Location: 1620779-1621643 bp Feature: domain Description: 2-Hacid_dh_1 Location: 1 620779-1 621 643 bp Feature: gene Location: 1621678-1621935 bp Feature: gene Location: 1622390-1623640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622600-1623218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 622600-1 62321 8 bp Feature: domain Description: GIIM Note: maturase Location: 1623275-1623485 bp Feature: domain Description: GIIM Note: maturase Location: 1 623275-1 623485 bp Feature: gene Location: 1623745-1625190 bp Feature: domain Description: AlsT Location: 1623778-1625104 bp Feature: domain Description: AlsT Location: 1 623778-1 6251 04 bp Feature: gene Location: 1625601-1626344 bp Feature: domain Description: GlnQ Location: 1625604-1626330 bp Feature: domain Description: GlnQ Location: 1 625604-1 626330 bp Feature: gene Location: 1967551-1968861 bp Feature: domain Description: CwlO1 Location: 1967554-1968436 bp Feature: domain Description: CwlO1 Location: 1 967554-1 968436 bp Feature: domain Description: Peptidase_M23 Location: 1968529-1968826 bp Feature: domain Description: Peptidase_M23 Location: 1 968529-1 968826 bp Feature: gene Location: 1969315-1970805 bp Feature: domain Description: prc Location: 1969564-1970557 bp Feature: domain Description: prc Location: 1 969564-1 970557 bp Feature: domain Description: PG_binding_1 Location: 1970560-1970719 bp Feature: domain Description: PG_binding_1 Location: 1 970560-1 97071 9 bp Feature: gene Location: 1971376-1972626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971586-1972204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 971 586-1 972204 bp Feature: domain Description: GIIM Note: maturase Location: 1972261-1972471 bp Feature: domain Description: GIIM Note: maturase Location: 1 972261 -1 972471 bp Feature: gene Location: 1972896-1974803 bp Feature: domain Description: PDZ_serine_protease Location: 1973895-1974087 bp Feature: domain Description: PDZ_serine_protease Location: 1 973895-1 974087 bp Feature: gene Location: 1975105-1977297 bp Feature: domain Description: PRK05298 Location: 1975315-1977289 bp Feature: domain Description: PRK05298 Location: 1 97531 5-1 977289 bp Feature: gene Location: 2014764-2015513 bp Feature: domain Description: YvaK Location: 2014773-2015493 bp Feature: domain Description: YvaK Location: 201 4773-201 5493 bp Feature: gene Location: 2015559-2017910 bp Feature: domain Description: RNase_R Location: 2015574-2017677 bp Feature: domain Description: RNase_R Location: 201 5574-201 7677 bp Feature: gene Location: 2018497-2019747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018707-2019325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 8707-201 9325 bp Feature: domain Description: GIIM Note: maturase Location: 2019382-2019592 bp Feature: domain Description: GIIM Note: maturase Location: 201 9382-201 9592 bp Feature: gene Location: 2020801-2021133 bp Feature: domain Description: DUF326 Location: 2020828-2021125 bp Feature: domain Description: DUF326 Location: 2020828-2021 1 25 bp Feature: gene Location: 2021382-2021849 bp Feature: domain Description: smpB Location: 2021397-2021832 bp Feature: domain Description: smpB Location: 2021 397-2021 832 bp Feature: gene Location: 2752267-2752998 bp Feature: domain Description: DapD_Ac Location: 2752297-2752987 bp Feature: domain Description: DapD_Ac Location: 2752297-2752987 bp Feature: gene Location: 2753001-2754146 bp Feature: domain Description: M20_Acy1_YkuR-like Location: 2753040-2754129 bp Feature: domain Description: M20_Acy1 _YkuR-like Location: 2753040-27541 29 bp Feature: gene Location: 2754716-2755966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754926-2755544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754926-2755544 bp Feature: domain Description: GIIM Note: maturase Location: 2755601-2755811 bp Feature: domain Description: GIIM Note: maturase Location: 2755601 -275581 1 bp Feature: gene Location: 2756331-2756588 bp Feature: domain Description: PRK03094 Location: 2756337-2756571 bp Feature: domain Description: PRK03094 Location: 2756337-2756571 bp Feature: gene Location: 2756807-2757649 bp Feature: domain Description: MscS Location: 2756837-2757629 bp Feature: domain Description: MscS Location: 2756837-2757629 bp Feature: gene Location: 3047729-3049237 bp Feature: domain Description: COG3333 Location: 3047732-3049214 bp Feature: domain Description: COG3333 Location: 3047732-304921 4 bp Feature: gene Location: 3049482-3049757 bp Feature: gene Location: 3050343-3051593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3050553-3051171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3050553-3051 1 71 bp Feature: domain Description: GIIM Note: maturase Location: 3051225-3051438 bp Feature: domain Description: GIIM Note: maturase Location: 3051 225-3051 438 bp Feature: gene Location: 3051684-3052307 bp Feature: domain Description: PRK00215 Location: 3051693-3052299 bp Feature: domain Description: PRK0021 5 Location: 3051 693-3052299 bp Feature: gene Location: 3052522-3052839 bp Feature: domain Description: PRK14125 Location: 3052546-3052822 bp Feature: domain Description: PRK1 41 25 Location: 3052546-3052822 bp Feature: gene Location: 4339165-4340127 bp Feature: domain Description: AmpC Location: 4339282-4340065 bp Feature: domain Description: AmpC Location: 4339282-4340065 bp Feature: gene Location: 4340304-4340729 bp Feature: domain Description: DUF4395 Location: 4340322-4340703 bp Feature: domain Description: DUF4395 Location: 4340322-4340703 bp Feature: gene Location: 4340918-4342168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4341128-4341746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4341 1 28-4341 746 bp Feature: domain Description: GIIM Note: maturase Location: 4341803-4342013 bp Feature: domain Description: GIIM Note: maturase Location: 4341 803-434201 3 bp Feature: gene Location: 4342747-4343094 bp Feature: domain Description: YflT Location: 4342765-4343056 bp Feature: domain Description: YflT Location: 4342765-4343056 bp Feature: gene Location: 4343368-4343889 bp Feature: gene Location: 4653368-4654297 bp Feature: domain Description: spore_III_AA Location: 4653452-4654256 bp Feature: domain Description: spore_III_AA Location: 4653452-4654256 bp Feature: gene Location: 4654551-4654958 bp Feature: gene Location: 4655118-4655831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4655121-4655409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46551 21 -4655409 bp Feature: domain Description: GIIM Note: maturase Location: 4655463-4655676 bp Feature: domain Description: GIIM Note: maturase Location: 4655463-4655676 bp Feature: gene Location: 4656767-4657324 bp Feature: domain Description: PRK00529 Location: 4656770-4657322 bp Feature: domain Description: PRK00529 Location: 4656770-4657322 bp Feature: gene Location: 4657358-4658428 bp Feature: domain Description: PepP Location: 4657364-4658414 bp Feature: domain Description: PepP Location: 4657364-465841 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_MepA_like (cd13143), HTH_MARR (smart00347), RVT-GII, GIIM (pfam08388), Dps (COG0783), Mn_catalase (pfam05067), 2-Hacid_dh_1 (cd05300), AlsT (COG1115), GlnQ (COG1126), CwlO1 (COG3883)
Peptidase_M23 (pfam01551), prc (TIGR00225), PG_binding_1 (pfam01471), PDZ_serine_protease (cd00987), PRK05298 (excinuclease ABC subunit UvrB), YvaK (COG1647), RNase_R (TIGR02063), DUF326 (pfam03860), smpB (TIGR00086), DapD_Ac (TIGR03532)
M20_Acy1_YkuR-like (cd05670), PRK03094 (hypothetical protein; Provisional), MscS (COG0668), COG3333 (TctA family transporter ), PRK00215 (transcriptional repressor LexA), PRK14125 (cell division suppressor protein YneA; Provisional), AmpC (COG1680), DUF4395 (pfam14340), YflT (pfam11181), spore_III_AA (TIGR02858)
PRK00529 (elongation factor P; Validated), PepP (COG0006)

Seq: MTIV01000022.1 [Bacillus] clarkii strain DSM 8720 Scaffold2_1, whole genome shotgun sequence (234850 bp)
Overview 1 RT 1: 14665-19591 bp 2 RT 2: 150501-152919 bp 3 RT 3: 197605-202399 bp Neighborhood of RT #1 [14665, 19591] RVT-GII GIIM Neighborhood of RT #2 [150501, 152919] RVT-Retrons Neighborhood of RT #3 [197605, 202399] DUF723 DUF723 RVT-GII HNHc Feature: gene Location: 14665-14928 bp Feature: gene Location: 15141-15512 bp Feature: gene Location: 16084-17334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16294-16912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 94-16912 bp Feature: domain Description: GIIM Note: maturase Location: 16969-17179 bp Feature: domain Description: GIIM Note: maturase Location: 16969-17179 bp Feature: gene Location: 17733-18584 bp Feature: gene Location: 19172-19591 bp Feature: gene Location: 150501-150731 bp Feature: gene Location: 150889-151230 bp Feature: gene Location: 151223-152212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151322-151916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15132 2 -151916 bp Feature: gene Location: 152228-152548 bp Feature: gene Location: 152578-152919 bp Feature: gene Location: 197605-198873 bp Feature: domain Description: DUF723 Location: 197674-197794 bp Feature: domain Description: DUF72 3 Location: 197674-197794 bp Feature: domain Description: DUF723 Location: 197866-197983 bp Feature: domain Description: DUF72 3 Location: 197866-197983 bp Feature: gene Location: 199451-200077 bp Feature: gene Location: 200091-201911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200385-201081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 00385-2 01081 bp Feature: domain Description: HNHc Note: nucleases Location: 201645-201798 bp Feature: domain Description: HNHc Note: nucleases Location: 2 01645-2 01798 bp Feature: gene Location: 202007-202177 bp Feature: gene Location: 202223-202399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT-Retrons, DUF723 (pfam05265), HNHc (smart00507)