myRT

myRT report for GCA_002019795.1_ASM201979v1

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Seq: KV917382.1 Bacillus sp. FJAT-44921 genomic scaffold Scaffold2, whole genome shotgun sequence (202398 bp)
Overview 1 RT 1: 19657-33312 bp 2 RT 2: 39821-53427 bp 3 RT 3: 154817-160036 bp Neighborhood of RT #1 [19657, 34019] PRK06751 RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RhsA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Neighborhood of RT #2 [39821, 53427] RVT-GII HNH_4 DEXHc_Snf DEXHc_Snf RVT-GII Intron_maturas2 HNHc RVT-GII RVT-GII cas_Csn1 Neighborhood of RT #3 [154817, 160056] Prok-E2_D RVT-GII McrA PRTRC_ThiF PRTRC_ThiF Feature: gene Location: 19657-20010 bp Feature: gene Location: 20091-20354 bp Feature: domain Description: PRK06751 Location: 20103-20343 bp Feature: domain Description: PRK06751 Location: 201 03-20343 bp Feature: gene Location: 20948-22762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21212-22040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 21 2-22040 bp Feature: domain Description: Intron_maturas2 Location: 22121-22472 bp Feature: domain Description: Intron_maturas2 Location: 221 21 -22472 bp Feature: domain Description: HNHc Note: nucleases Location: 22589-22736 bp Feature: domain Description: HNHc Note: nucleases Location: 22589-22736 bp Feature: gene Location: 23249-23404 bp Feature: gene Location: 23588-23911 bp Feature: gene Location: 24656-26455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24950-25646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24950-25646 bp Feature: domain Description: HNHc Note: nucleases Location: 26192-26336 bp Feature: domain Description: HNHc Note: nucleases Location: 261 92-26336 bp Feature: gene Location: 26597-27595 bp Feature: gene Location: 27984-34019 bp Feature: domain Description: RhsA Location: 29955-30174 bp Feature: domain Description: RhsA Location: 29955-301 74 bp Feature: domain Description: RHS_repeat Location: 30210-30321 bp Feature: domain Description: RHS_repeat Location: 3021 0-30321 bp Feature: domain Description: RHS_repeat Location: 30636-30729 bp Feature: domain Description: RHS_repeat Location: 30636-30729 bp Feature: domain Description: RHS_repeat Location: 31827-31938 bp Feature: domain Description: RHS_repeat Location: 31 827-31 938 bp Feature: domain Description: RHS_repeat Location: 32010-32082 bp Feature: domain Description: RHS_repeat Location: 3201 0-32082 bp Feature: domain Description: RHS_repeat Location: 32109-32214 bp Feature: domain Description: RHS_repeat Location: 321 09-3221 4 bp Feature: domain Description: RHS_repeat Location: 32304-32391 bp Feature: domain Description: RHS_repeat Location: 32304-32391 bp Feature: domain Description: RHS_repeat Location: 32646-32754 bp Feature: domain Description: RHS_repeat Location: 32646-32754 bp Feature: domain Description: RHS_repeat Location: 32778-32859 bp Feature: domain Description: RHS_repeat Location: 32778-32859 bp Feature: domain Description: RHS_repeat Location: 33033-33138 bp Feature: domain Description: RHS_repeat Location: 33033-331 38 bp Feature: domain Description: RHS_repeat Location: 33222-33312 bp Feature: domain Description: RHS_repeat Location: 33222-3331 2 bp Feature: gene Location: 39821-40750 bp Feature: gene Location: 41152-41370 bp Feature: gene Location: 41426-43333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41747-42482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 747-42482 bp Feature: domain Description: HNH_4 Location: 43100-43187 bp Feature: domain Description: HNH_4 Location: 431 00-431 87 bp Feature: gene Location: 43418-44380 bp Feature: domain Description: DEXHc_Snf Location: 43496-43682 bp Feature: domain Description: DEXHc_Snf Location: 43496-43682 bp Feature: domain Description: DEXHc_Snf Location: 44078-44348 bp Feature: domain Description: DEXHc_Snf Location: 44078-44348 bp Feature: gene Location: 44981-46813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45248-46079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45248-46079 bp Feature: domain Description: Intron_maturas2 Location: 46151-46496 bp Feature: domain Description: Intron_maturas2 Location: 461 51 -46496 bp Feature: domain Description: HNHc Note: nucleases Location: 46616-46763 bp Feature: domain Description: HNHc Note: nucleases Location: 4661 6-46763 bp Feature: gene Location: 47283-47438 bp Feature: gene Location: 47841-49709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48156-48861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 56-48861 bp Feature: gene Location: 50088-50633 bp Feature: gene Location: 51336-52529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51660-52398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 660-52398 bp Feature: gene Location: 52516-53193 bp Feature: domain Description: cas_Csn1 Location: 52918-53059 bp Feature: domain Description: cas_Csn1 Location: 5291 8-53059 bp Feature: gene Location: 53296-53427 bp Feature: gene Location: 154817-155482 bp Feature: domain Description: Prok-E2_D Location: 155087-155438 bp Feature: domain Description: Prok-E2_D Location: 1 55087-1 55438 bp Feature: gene Location: 155510-156226 bp Feature: gene Location: 156921-158813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157269-157974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57269-1 57974 bp Feature: domain Description: McrA Location: 158559-158727 bp Feature: domain Description: McrA Location: 1 58559-1 58727 bp Feature: gene Location: 158993-159214 bp Feature: gene Location: 159217-160056 bp Feature: domain Description: PRTRC_ThiF Location: 159274-159697 bp Feature: domain Description: PRTRC_ThiF Location: 1 59274-1 59697 bp Feature: domain Description: PRTRC_ThiF Location: 159787-160036 bp Feature: domain Description: PRTRC_ThiF Location: 1 59787-1 60036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06751 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RhsA (COG3209), RHS_repeat (pfam05593), HNH_4 (pfam13395), DEXHc_Snf (cd17919), cas_Csn1 (TIGR01865), Prok-E2_D (pfam14460)
McrA (COG4058), PRTRC_ThiF (TIGR03736)