myRT

myRT report for GCA_002024905.2_ASM202490v2

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Seq: JMIC02000003.1 Escherichia coli strain LCT-EC001 Scaffold3, whole genome shotgun sequence (175241 bp)
Overview 1 RT 1: 67792-71414 bp Neighborhood of RT #1 [67792, 71539] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 67792-68020 bp Feature: gene Location: 67955-68160 bp Feature: gene Location: 68942-70609 bp Feature: RT Description: RVT_N Location: 68990-69227 bp Feature: RT Description: RVT_N Location: 68990-69227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69278-69920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69278-69920 bp Feature: domain Description: GIIM Note: maturase Location: 69971-70205 bp Feature: domain Description: GIIM Note: maturase Location: 69971 -70205 bp Feature: domain Description: HNHc Note: nucleases Location: 70415-70574 bp Feature: domain Description: HNHc Note: nucleases Location: 7041 5-70574 bp Feature: gene Location: 70929-71120 bp Feature: gene Location: 71117-71539 bp Feature: domain Description: DUF1380 Location: 71120-71414 bp Feature: domain Description: DUF1 380 Location: 71 1 20-71 41 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: JMIC02000001.1 Escherichia coli strain LCT-EC001 Scaffold1, whole genome shotgun sequence (4259009 bp)
Overview 1 RT 1: 51-4535 bp Neighborhood of RT #1 [51, 4537] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 51-371 bp Feature: gene Location: 509-2113 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 800-1391 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 800-1391 bp Feature: domain Description: TIR_2 Location: 1718-2051 bp Feature: domain Description: TIR_2 Location: 1718-2 051 bp Feature: gene Location: 2471-2731 bp Feature: domain Description: PRK10597 Location: 2474-2714 bp Feature: domain Description: PRK10597 Location: 2 474-2 714 bp Feature: gene Location: 2951-4537 bp Feature: domain Description: prfC Location: 2969-4535 bp Feature: domain Description: prfC Location: 2 969-4535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: JMIC02000002.1 Escherichia coli strain LCT-EC001 Scaffold2, whole genome shotgun sequence (591676 bp)
Overview 1 RT 1: 466771-472403 bp Neighborhood of RT #1 [466771, 472403] PRK09678 RVT-Retrons Arm-DNA-bind_3 InsE Feature: gene Location: 466771-467043 bp Feature: domain Description: PRK09678 Location: 466780-466936 bp Feature: domain Description: PRK09678 Location: 466780-46693 6 bp Feature: gene Location: 467689-468657 bp Feature: gene Location: 468659-469591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 468761-469355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 468761-4693 55 bp Feature: gene Location: 470046-471187 bp Feature: domain Description: Arm-DNA-bind_3 Location: 470055-470307 bp Feature: domain Description: Arm-DNA-bind_3 Location: 470055-4703 07 bp Feature: gene Location: 472079-472403 bp Feature: domain Description: InsE Location: 472082-472403 bp Feature: domain Description: InsE Location: 472082-472403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), InsE (COG2963)

Seq: JMIC02000004.1 Escherichia coli strain LCT-EC001 Scaffold4, whole genome shotgun sequence (123451 bp)
Overview 1 RT 1: 4985-8627 bp Neighborhood of RT #1 [4985, 8752] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 4985-5104 bp Feature: gene Location: 5249-5424 bp Feature: gene Location: 6161-7828 bp Feature: RT Description: RVT_N Location: 6209-6446 bp Feature: RT Description: RVT_N Location: 6209-64 4 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6497-7139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 97-7139 bp Feature: domain Description: GIIM Note: maturase Location: 7190-7424 bp Feature: domain Description: GIIM Note: maturase Location: 7190-74 24 bp Feature: domain Description: HNHc Note: nucleases Location: 7634-7793 bp Feature: domain Description: HNHc Note: nucleases Location: 7634 -7793 bp Feature: gene Location: 8142-8333 bp Feature: gene Location: 8330-8752 bp Feature: domain Description: DUF1380 Location: 8333-8627 bp Feature: domain Description: DUF1380 Location: 8333-8627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)