myRT

myRT report for GCA_002025445.1_KWv02

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Seq: MVGR01000003.1 Microcystis aeruginosa KW Contig2, whole genome shotgun sequence (1377459 bp)
Overview 1 RT 1: 129289-135009 bp 2 RT 2: 516106-519853 bp 3 RT 3: 1251653-1260066 bp Neighborhood of RT #1 [129289, 135009] NERD DEXXQc_Helz-like RVT-UG19 SlyX DDE_Tnp_IS66 DDE_Tnp_IS66 Neighborhood of RT #2 [516106, 520215] HicA_toxin RVT_N RVT-GII GIIM HNHc NdhS HAS-barrel Neighborhood of RT #3 [1251653, 1260179] GlnA3 RVT_N RVT-GII RVT-GII GIIM COG5421 McrA Feature: gene Location: 129289-129648 bp Feature: gene Location: 129799-131421 bp Ori: OPF18639.1 Feature: domain Description: NERD Location: 129844-130132 bp Feature: domain Description: NERD Location: 1 29844-1 301 32 bp Feature: domain Description: DEXXQc_Helz-like Location: 130474-130678 bp Feature: domain Description: DEXXQc_Helz-like Location: 1 30474-1 30678 bp Feature: gene Location: 131455-132663 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 131464-131878 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 1 31 464-1 31 878 bp Feature: gene Location: 132783-134435 bp Ori: OPF18640.1 Feature: domain Description: SlyX Location: 132852-132969 bp Feature: domain Description: SlyX Location: 1 32852-1 32969 bp Feature: domain Description: DDE_Tnp_IS66 Location: 133269-133626 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 33269-1 33626 bp Feature: domain Description: DDE_Tnp_IS66 Location: 133860-134265 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 33860-1 34265 bp Feature: gene Location: 134509-135009 bp Feature: gene Location: 516106-516285 bp Ori: OPF18921.1 Feature: domain Description: HicA_toxin Location: 516118-516274 bp Feature: domain Description: HicA_toxin Location: 51 61 1 8-51 6274 bp Feature: gene Location: 517109-517312 bp Feature: gene Location: 517395-519242 bp Ori: OPF18923.1 Feature: domain Description: RVT_N Location: 517461-517704 bp Feature: domain Description: RVT_N Location: 51 7461 -51 7704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517749-518418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7749-51 841 8 bp Feature: domain Description: GIIM Note: maturase Location: 518523-518748 bp Feature: domain Description: GIIM Note: maturase Location: 51 8523-51 8748 bp Feature: domain Description: HNHc Note: nucleases Location: 518970-519114 bp Feature: domain Description: HNHc Note: nucleases Location: 51 8970-51 91 1 4 bp Feature: gene Location: 519344-519538 bp Ori: OPF19626.1 Feature: domain Description: NdhS Location: 519350-519503 bp Feature: domain Description: NdhS Location: 51 9350-51 9503 bp Feature: gene Location: 519541-520215 bp Ori: OPF18924.1 Feature: domain Description: HAS-barrel Location: 519595-519853 bp Feature: domain Description: HAS-barrel Location: 51 9595-51 9853 bp Feature: gene Location: 1251653-1253824 bp Ori: OPF19493.1 Feature: domain Description: GlnA3 Location: 1251668-1253822 bp Feature: domain Description: GlnA3 Location: 1 251 668-1 253822 bp Feature: gene Location: 1254604-1254786 bp Feature: gene Location: 1255016-1255804 bp Feature: domain Description: RVT_N Location: 1255067-1255310 bp Feature: domain Description: RVT_N Location: 1 255067-1 25531 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255355-1255784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 255355-1 255784 bp Feature: gene Location: 1255836-1256609 bp Feature: gene Location: 1256690-1256899 bp Feature: gene Location: 1257030-1257569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257072-1257294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 257072-1 257294 bp Feature: domain Description: GIIM Note: maturase Location: 1257399-1257570 bp Feature: domain Description: GIIM Note: maturase Location: 1 257399-1 257570 bp Feature: gene Location: 1257818-1259476 bp Feature: domain Description: COG5421 Location: 1257848-1259396 bp Feature: domain Description: COG5421 Location: 1 257848-1 259396 bp Feature: gene Location: 1259613-1260179 bp Feature: domain Description: McrA Location: 1259820-1260066 bp Feature: domain Description: McrA Location: 1 259820-1 260066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), DEXXQc_Helz-like (cd18038), RVT-UG19, SlyX (pfam04102), DDE_Tnp_IS66 (pfam03050), HicA_toxin (pfam07927), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)
NdhS (pfam11623), HAS-barrel (pfam09378), GlnA3 (COG3968), COG5421 (Transposase ), McrA (COG4058)