myRT

myRT report for GCA_002027765.1_ASM202776v1

Download annotations/find similar RTs

Seq: MQVF01000012.1 Francisella tularensis subsp. holarctica strain FT8C-4F NODE_12_length_35883_cov_344.116_ID_1479, whole genome shotgun sequence (35883 bp)
Overview 1 RT 1: 22-4259 bp Neighborhood of RT #1 [22, 4264] RVT-Retrons KOG0539 rlmL Feature: gene Location: 22-516 bp Ori: OPH44533.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40-352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40-352 bp Feature: gene Location: 1482-2036 bp Ori: OPH44506.1 Feature: domain Description: KOG0539 Location: 1554-2031 bp Feature: domain Description: KOG0539 Location: 1 554-2031 bp Feature: gene Location: 2111-4264 bp Ori: OPH44507.1 Feature: domain Description: rlmL Location: 2123-4259 bp Feature: domain Description: rlmL Location: 21 23-4259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, KOG0539 (KOG0539, Sphingolipid fatty acid hydroxylase ), rlmL (PRK11783)

Seq: MQVF01000076.1 Francisella tularensis subsp. holarctica strain FT8C-4F NODE_76_length_6030_cov_397.536_ID_8796, whole genome shotgun sequence (6030 bp)
Overview 1 RT 1: 1310-5620 bp Neighborhood of RT #1 [1310, 5637] RVT-UG4 DUF2797 Feature: gene Location: 1310-1535 bp Feature: gene Location: 1872-4143 bp Feature: gene Location: 4149-4581 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4155-4335 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4155-4335 bp Feature: gene Location: 4822-5637 bp Ori: OPH43479.1 Feature: domain Description: DUF2797 Location: 4924-5620 bp Feature: domain Description: DUF2 797 Location: 492 4-562 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF2797 (pfam10977)

Seq: MQVF01000005.1 Francisella tularensis subsp. holarctica strain FT8C-4F NODE_5_length_45285_cov_379.994_ID_2045, whole genome shotgun sequence (45285 bp)
Overview 1 RT 1: 28006-31628 bp Neighborhood of RT #1 [28006, 31628] SufE DsbB RVT-UG4 Feature: gene Location: 28006-28422 bp Ori: OPH44781.1 Feature: domain Description: SufE Location: 28045-28399 bp Feature: domain Description: SufE Location: 28045-283 99 bp Feature: gene Location: 29129-29665 bp Ori: OPH44782.1 Feature: domain Description: DsbB Location: 29162-29612 bp Feature: domain Description: DsbB Location: 29162-29612 bp Feature: gene Location: 29977-30204 bp Ori: OPH44783.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30043-30148 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 0043 -3 0148 bp Feature: gene Location: 30967-31380 bp Feature: gene Location: 31431-31628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), DsbB (pfam02600), RVT-UG4