myRT

myRT report for GCA_002029325.1_ASM202932v1

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Seq: MULN01000192.1 Pseudomonas veronii strain VI4T1 NODE_20_length_88153_cov_20.6179, whole genome shotgun sequence (88153 bp)
Overview 1 RT 1: 85430-88153 bp Neighborhood of RT #1 [85430, 88153] RVT-DGRs Avd_like Feature: gene Location: 85430-85765 bp Feature: gene Location: 85811-86101 bp Feature: gene Location: 86146-87285 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86377-87061 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86377-87061 bp Feature: gene Location: 87517-87870 bp Feature: domain Description: Avd_like Location: 87544-87850 bp Feature: domain Description: Avd_like Location: 87544-87850 bp Feature: gene Location: 87928-88153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: MULN01000211.1 Pseudomonas veronii strain VI4T1 NODE_1_length_237158_cov_31.3808, whole genome shotgun sequence (237158 bp)
Overview 1 RT 1: 212219-217602 bp Neighborhood of RT #1 [212219, 217685] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 212219-212992 bp Feature: gene Location: 213741-214067 bp Feature: gene Location: 214217-215485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214430-215087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 14430-2 15087 bp Feature: domain Description: GIIM Note: maturase Location: 215165-215387 bp Feature: domain Description: GIIM Note: maturase Location: 2 15165-2 15387 bp Feature: gene Location: 215978-216515 bp Feature: domain Description: DUF772 Location: 216128-216323 bp Feature: domain Description: DUF772 Location: 2 1612 8-2 1632 3 bp Feature: gene Location: 216858-217685 bp Feature: domain Description: ABC_phnC Location: 216888-217602 bp Feature: domain Description: ABC_phnC Location: 2 16888-2 17602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: MULN01000197.1 Pseudomonas veronii strain VI4T1 NODE_15_length_113463_cov_31.2137, whole genome shotgun sequence (113463 bp)
Overview 1 RT 1: 51099-56098 bp Neighborhood of RT #1 [51099, 56121] LbH_AT_putative RVT-GII rpsA cmk Feature: gene Location: 51099-51761 bp Feature: domain Description: LbH_AT_putative Location: 51117-51717 bp Feature: domain Description: LbH_AT_putative Location: 51117-51717 bp Feature: gene Location: 52123-52628 bp Feature: gene Location: 52788-53042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52791-53043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52791-53 043 bp Feature: gene Location: 53618-55312 bp Feature: domain Description: rpsA Location: 53621-55304 bp Feature: domain Description: rpsA Location: 53 621-553 04 bp Feature: gene Location: 55432-56121 bp Feature: domain Description: cmk Location: 55444-56098 bp Feature: domain Description: cmk Location: 55444-56098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_AT_putative (cd03360), RVT-GII, rpsA (TIGR00717), cmk (TIGR00017)

Seq: MULN01000179.1 Pseudomonas veronii strain VI4T1 NODE_33_length_63962_cov_18.7799, whole genome shotgun sequence (63962 bp)
Overview 1 RT 1: 45006-48868 bp Neighborhood of RT #1 [45006, 48876] RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 45006-46709 bp Feature: RT Description: RVT_N Location: 45063-45306 bp Feature: RT Description: RVT_N Location: 4 5063-4 5306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45351-45987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5351-4 5987 bp Feature: domain Description: GIIM Note: maturase Location: 46038-46272 bp Feature: domain Description: GIIM Note: maturase Location: 4 6038-4 6272 bp Feature: domain Description: HNH Note: nucleases Location: 46524-46662 bp Feature: domain Description: HNH Note: nucleases Location: 4 6524 -4 6662 bp Feature: gene Location: 46839-48149 bp Feature: domain Description: tig Location: 46842-48120 bp Feature: domain Description: tig Location: 4 684 2-4 8120 bp Feature: gene Location: 48241-48876 bp Feature: domain Description: clpP Location: 48295-48868 bp Feature: domain Description: clpP Location: 4 8295-4 8868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tig (TIGR00115), clpP

Seq: MULN01000167.1 Pseudomonas veronii strain VI4T1 NODE_45_length_54799_cov_46.7341, whole genome shotgun sequence (54799 bp)
Overview 1 RT 1: 25493-29951 bp Neighborhood of RT #1 [25493, 30366] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C ACR3 Feature: gene Location: 25493-26800 bp Feature: domain Description: LZ_Tnp_IS66 Location: 25625-25832 bp Feature: domain Description: LZ_Tnp_IS66 Location: 25 625 -25 832 bp Feature: domain Description: zf-IS66 Location: 25871-25985 bp Feature: domain Description: zf-IS66 Location: 25 871-25 985 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26027-26801 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26027-26801 bp Feature: gene Location: 27134-27349 bp Feature: gene Location: 27379-29040 bp Feature: RT Description: RVT_N Location: 27424-27667 bp Feature: RT Description: RVT_N Location: 27424-27667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27712-28348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27712-28348 bp Feature: domain Description: GIIM Note: maturase Location: 28405-28633 bp Feature: domain Description: GIIM Note: maturase Location: 28405 -28633 bp Feature: gene Location: 29145-29366 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29151-29217 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2915 1-29217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29238-29349 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29238-29349 bp Feature: gene Location: 29405-30366 bp Feature: domain Description: ACR3 Location: 29420-29951 bp Feature: domain Description: ACR3 Location: 29420-2995 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)