myRT

myRT report for GCA_002029925.1_ASM202992v1

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Seq: MZND01000024.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_24_21_77, whole genome shotgun sequence (113620 bp)
Overview 1 RT 1: 27164-37470 bp 2 RT 2: 53729-61913 bp Neighborhood of RT #1 [27164, 37472] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [53729, 61927] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 27164-28285 bp Feature: domain Description: COG3177 Location: 27182-28274 bp Feature: domain Description: COG31 77 Location: 271 82-28274 bp Feature: gene Location: 28544-28681 bp Feature: gene Location: 29009-30694 bp Feature: RT Description: RVT_N Location: 29066-29306 bp Feature: RT Description: RVT_N Location: 29066-29306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29354-29990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29354-29990 bp Feature: domain Description: GIIM Note: maturase Location: 30044-30275 bp Feature: domain Description: GIIM Note: maturase Location: 30044-30275 bp Feature: domain Description: HNH Note: nucleases Location: 30527-30665 bp Feature: domain Description: HNH Note: nucleases Location: 30527-30665 bp Feature: gene Location: 31775-35512 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 31883-32540 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 31 883-32540 bp Feature: domain Description: PRK09776 Location: 32753-33224 bp Feature: domain Description: PRK09776 Location: 32753-33224 bp Feature: domain Description: PAS Location: 33296-33806 bp Feature: domain Description: PAS Location: 33296-33806 bp Feature: domain Description: PRK10060 Location: 33815-35462 bp Feature: domain Description: PRK1 0060 Location: 3381 5-35462 bp Feature: gene Location: 35619-37472 bp Feature: domain Description: PRK05658 Location: 35631-37470 bp Feature: domain Description: PRK05658 Location: 35631 -37470 bp Feature: gene Location: 53729-55021 bp Feature: domain Description: PRK10770 Location: 53819-55013 bp Feature: domain Description: PRK1 0770 Location: 5381 9-5501 3 bp Feature: gene Location: 55002-57794 bp Feature: domain Description: LptD Location: 55197-57780 bp Feature: domain Description: LptD Location: 551 97-57780 bp Feature: gene Location: 57927-59639 bp Feature: RT Description: RVT_N Location: 57984-58227 bp Feature: RT Description: RVT_N Location: 57984-58227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58272-58905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58272-58905 bp Feature: domain Description: YkfC Location: 59118-59268 bp Feature: domain Description: YkfC Location: 591 1 8-59268 bp Feature: domain Description: HNH Note: nucleases Location: 59445-59583 bp Feature: domain Description: HNH Note: nucleases Location: 59445-59583 bp Feature: gene Location: 59826-60038 bp Feature: gene Location: 60911-61927 bp Feature: domain Description: COG3178 Location: 60914-61913 bp Feature: domain Description: COG31 78 Location: 6091 4-61 91 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )