myRT

myRT report for GCA_002030995.1_ASM203099v1

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Seq: MXFN01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2187 NODE_18_length_81459_cov_6.87522, whole genome shotgun sequence (81459 bp)
Overview 1 RT 1: 31912-36837 bp Neighborhood of RT #1 [31912, 36845] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31912-32634 bp Feature: domain Description: INT_P4_C Location: 32032-32563 bp Feature: domain Description: INT_P4_C Location: 32032-32563 bp Feature: gene Location: 32959-33921 bp Feature: gene Location: 33921-34856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34032-34617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34032-3461 7 bp Feature: gene Location: 35104-35313 bp Feature: gene Location: 35658-36845 bp Feature: domain Description: PRK10473 Location: 35661-36837 bp Feature: domain Description: PRK1 0473 Location: 35661 -36837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: MXFN01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2187 NODE_26_length_48925_cov_7.04688, whole genome shotgun sequence (48925 bp)
Overview 1 RT 1: 25757-28940 bp Neighborhood of RT #1 [25757, 28940] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 25757-25948 bp Feature: gene Location: 26019-26153 bp Feature: gene Location: 26226-27893 bp Feature: RT Description: RVT_N Location: 26274-26511 bp Feature: RT Description: RVT_N Location: 2 62 74-2 6511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26562-27204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6562 -2 72 04 bp Feature: domain Description: GIIM Note: maturase Location: 27255-27489 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 55-2 7489 bp Feature: domain Description: HNHc Note: nucleases Location: 27699-27858 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7699-2 7858 bp Feature: gene Location: 28173-28355 bp Feature: gene Location: 28467-28940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)