myRT

myRT report for GCA_002031565.1_ASM203156v1

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Seq: MXHC01000024.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2120 NODE_24_length_50379_cov_4.38842, whole genome shotgun sequence (50379 bp)
Overview 1 RT 1: 5714-10154 bp Neighborhood of RT #1 [5714, 10154] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5714-5947 bp Feature: domain Description: DUF905 Location: 5744-5942 bp Feature: domain Description: DUF905 Location: 5744-5942 bp Feature: gene Location: 6005-6445 bp Feature: domain Description: PRK13732 Location: 6011-6443 bp Feature: domain Description: PRK1 3732 Location: 601 1 -6443 bp Feature: gene Location: 6640-8541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6907-7738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6907-7738 bp Feature: domain Description: Intron_maturas2 Location: 7852-8110 bp Feature: domain Description: Intron_maturas2 Location: 7852-81 1 0 bp Feature: domain Description: HNHc Note: nucleases Location: 8284-8446 bp Feature: domain Description: HNHc Note: nucleases Location: 8284-8446 bp Feature: gene Location: 9104-9772 bp Feature: gene Location: 9963-10154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MXHC01000028.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2120 NODE_28_length_47911_cov_1.79203, whole genome shotgun sequence (47911 bp)
Overview 1 RT 1: 2574-7499 bp Neighborhood of RT #1 [2574, 7507] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 2574-3296 bp Feature: domain Description: INT_P4_C Location: 2694-3225 bp Feature: domain Description: INT_P4_C Location: 2 694-32 2 5 bp Feature: gene Location: 3621-4583 bp Feature: gene Location: 4583-5518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4694-5279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4694-52 79 bp Feature: gene Location: 5766-5975 bp Feature: gene Location: 6320-7507 bp Feature: domain Description: PRK10473 Location: 6323-7499 bp Feature: domain Description: PRK10473 Location: 632 3-7499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)