myRT

myRT report for GCA_002034005.1_ASM203400v1

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Seq: MXLW01000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CDC SSU8074 NODE_1_length_329539_cov_0.166015, whole genome shotgun sequence (329539 bp)
Overview 1 RT 1: 45677-49853 bp Neighborhood of RT #1 [45677, 49853] PRK10473 RVT-Retrons Feature: gene Location: 45677-46864 bp Feature: domain Description: PRK10473 Location: 45680-46856 bp Feature: domain Description: PRK1 0473 Location: 45680-46856 bp Feature: gene Location: 47209-47418 bp Feature: gene Location: 47666-48601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47777-48362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47777-48362 bp Feature: gene Location: 48601-49563 bp Feature: gene Location: 49590-49853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons

Seq: MXLW01000009.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CDC SSU8074 NODE_9_length_148090_cov_0.160685, whole genome shotgun sequence (148090 bp)
Overview 1 RT 1: 16742-20989 bp Neighborhood of RT #1 [16742, 21030] VagC PLDc_Nuc RVT_N RVT-GII GIIM HNHc nlpD Peptidase_M23 Feature: gene Location: 16742-17170 bp Feature: domain Description: VagC Location: 16946-17168 bp Feature: domain Description: VagC Location: 16946-17168 bp Feature: gene Location: 17169-17390 bp Feature: domain Description: PLDc_Nuc Location: 17271-17382 bp Feature: domain Description: PLDc_Nuc Location: 172 71-17382 bp Feature: gene Location: 17602-19245 bp Feature: RT Description: RVT_N Location: 17650-17890 bp Feature: RT Description: RVT_N Location: 17650-17890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17938-18559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17938-18559 bp Feature: domain Description: GIIM Note: maturase Location: 18613-18844 bp Feature: domain Description: GIIM Note: maturase Location: 18613-18844 bp Feature: domain Description: HNHc Note: nucleases Location: 19036-19195 bp Feature: domain Description: HNHc Note: nucleases Location: 19036-19195 bp Feature: gene Location: 19814-20014 bp Feature: gene Location: 20272-21030 bp Feature: domain Description: nlpD Location: 20371-20596 bp Feature: domain Description: nlpD Location: 2 0371-2 0596 bp Feature: domain Description: Peptidase_M23 Location: 20710-20989 bp Feature: domain Description: Peptidase_M2 3 Location: 2 0710-2 0989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VagC (COG4456), PLDc_Nuc (cd09170), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), nlpD (PRK10871), Peptidase_M23 (pfam01551)