myRT

myRT report for GCA_002035925.1_ASM203592v1

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Seq: MXPM01000121.1 Salmonella enterica subsp. enterica serovar Brandenburg strain BCW_1516 NODE_121_length_10855_cov_0.477408, whole genome shotgun sequence (10855 bp)
Overview 1 RT 1: 3801-8122 bp Neighborhood of RT #1 [3801, 8124] DDE_3 HTH_23 RVT-Retrons DUF4756 Feature: gene Location: 3801-4421 bp Feature: domain Description: DDE_3 Location: 3921-4338 bp Feature: domain Description: DDE_3 Location: 3921 -4338 bp Feature: gene Location: 4428-4832 bp Feature: domain Description: HTH_23 Location: 4521-4647 bp Feature: domain Description: HTH_23 Location: 4521 -4647 bp Feature: gene Location: 4975-5955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5158-5707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 58-5707 bp Feature: gene Location: 6245-7204 bp Feature: gene Location: 7723-8124 bp Feature: domain Description: DUF4756 Location: 7726-8122 bp Feature: domain Description: DUF4756 Location: 7726-81 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), RVT-Retrons, DUF4756 (pfam15948)

Seq: MXPM01000070.1 Salmonella enterica subsp. enterica serovar Brandenburg strain BCW_1516 NODE_70_length_23897_cov_0.189092, whole genome shotgun sequence (23897 bp)
Overview 1 RT 1: 8880-11216 bp Neighborhood of RT #1 [8880, 11216] HTH_XRE RVT-Retrons Feature: gene Location: 8880-9179 bp Feature: gene Location: 9216-9524 bp Feature: domain Description: HTH_XRE Location: 9228-9393 bp Feature: domain Description: HTH_XRE Location: 92 2 8-9393 bp Feature: gene Location: 9502-10452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9682-10225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9682 -102 2 5 bp Feature: gene Location: 10592-11023 bp Feature: gene Location: 11022-11216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons