myRT

myRT report for GCA_002043375.1_ASM204337v1

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Seq: MYUU01000020.1 Salmonella enterica strain BCW_6309 NODE_20_length_57846_cov_4.16638, whole genome shotgun sequence (57846 bp)
Overview 1 RT 1: 53146-55448 bp Neighborhood of RT #1 [53146, 55528] RVT-Retrons TIR-like Feature: gene Location: 53146-53274 bp Feature: gene Location: 53421-53648 bp Feature: gene Location: 53679-54638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53859-54381 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53859-54381 bp Feature: gene Location: 54667-55065 bp Feature: gene Location: 55004-55528 bp Feature: domain Description: TIR-like Location: 55094-55448 bp Feature: domain Description: TIR-like Location: 55094-55448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137)

Seq: MYUU01000002.1 Salmonella enterica strain BCW_6309 NODE_2_length_631359_cov_4.04503, whole genome shotgun sequence (631359 bp)
Overview 1 RT 1: 166371-172676 bp Neighborhood of RT #1 [166371, 172678] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 166371-168071 bp Feature: domain Description: 5 Location: 167595-167889 bp Feature: domain Description: 5 Location: 167595-167889 bp Feature: gene Location: 168201-168368 bp Feature: gene Location: 168978-169742 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 169101-169554 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 169101-169554 bp Feature: gene Location: 170066-170572 bp Feature: domain Description: PRK10201 Location: 170069-170567 bp Feature: domain Description: PRK102 01 Location: 170069-170567 bp Feature: gene Location: 170696-172678 bp Feature: domain Description: PRK05658 Location: 170834-172676 bp Feature: domain Description: PRK05658 Location: 170834-172 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: MYUU01000003.1 Salmonella enterica strain BCW_6309 NODE_3_length_533697_cov_4.21953, whole genome shotgun sequence (533697 bp)
Overview 1 RT 1: 343047-346561 bp Neighborhood of RT #1 [343047, 346561] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 343047-343412 bp Feature: domain Description: DUF4156 Location: 343128-343404 bp Feature: domain Description: DUF4156 Location: 3 43 128-3 43 404 bp Feature: gene Location: 343755-343982 bp Feature: domain Description: DUF2188 Location: 343770-343947 bp Feature: domain Description: DUF2188 Location: 3 43 770-3 43 947 bp Feature: gene Location: 344131-345804 bp Feature: domain Description: RVT_N Location: 344194-344428 bp Feature: domain Description: RVT_N Location: 3 44194-3 44428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344482-345127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 44482-3 45127 bp Feature: domain Description: GIIM Note: maturase Location: 345181-345412 bp Feature: domain Description: GIIM Note: maturase Location: 3 45181-3 45412 bp Feature: domain Description: HNHc Note: nucleases Location: 345622-345778 bp Feature: domain Description: HNHc Note: nucleases Location: 3 45622-3 45778 bp Feature: gene Location: 345942-346178 bp Feature: gene Location: 346235-346561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)