myRT

myRT report for GCA_002044735.1_ASM204473v1

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Seq: MYXV01000015.1 Salmonella enterica subsp. enterica serovar Kintambo strain 90-0348 NODE_15_length_38491_cov_4.93369, whole genome shotgun sequence (38491 bp)
Overview 1 RT 1: 10529-19267 bp Neighborhood of RT #1 [10529, 19275] groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc DUF4156 Feature: gene Location: 10529-12175 bp Feature: domain Description: groEL Location: 10535-12161 bp Feature: domain Description: groEL Location: 1 0535-1 21 61 bp Feature: gene Location: 12516-12842 bp Feature: gene Location: 13273-14949 bp Feature: domain Description: RVT_N Location: 13336-13570 bp Feature: domain Description: RVT_N Location: 1 3336-1 3570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13624-14269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3624-1 4269 bp Feature: domain Description: GIIM Note: maturase Location: 14323-14554 bp Feature: domain Description: GIIM Note: maturase Location: 1 4323-1 4554 bp Feature: domain Description: HNHc Note: nucleases Location: 14764-14920 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4764-1 4920 bp Feature: gene Location: 14996-15289 bp Feature: gene Location: 15665-15916 bp Feature: gene Location: 16521-16655 bp Feature: domain Description: RVT_N Location: 16572-16650 bp Feature: domain Description: RVT_N Location: 1 6572-1 6650 bp Feature: gene Location: 16793-16945 bp Feature: gene Location: 17249-17797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17252-17504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7252-1 7504 bp Feature: domain Description: GIIM Note: maturase Location: 17558-17756 bp Feature: domain Description: GIIM Note: maturase Location: 1 7558-1 7756 bp Feature: gene Location: 17766-18164 bp Feature: domain Description: HNHc Note: nucleases Location: 17994-18156 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7994-1 81 56 bp Feature: gene Location: 18922-19275 bp Feature: domain Description: DUF4156 Location: 18991-19267 bp Feature: domain Description: DUF41 56 Location: 1 8991 -1 9267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)

Seq: MYXV01000053.1 Salmonella enterica subsp. enterica serovar Kintambo strain 90-0348 NODE_53_length_18079_cov_4.44383, whole genome shotgun sequence (18079 bp)
Overview 1 RT 1: 11752-17024 bp Neighborhood of RT #1 [11752, 17041] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 PRK09678 Feature: gene Location: 11752-13932 bp Feature: domain Description: type_I_sec_LssB Location: 11812-13885 bp Feature: domain Description: type_I_sec_LssB Location: 11812 -13885 bp Feature: gene Location: 13913-15103 bp Feature: domain Description: type_I_hlyD Location: 13994-14438 bp Feature: domain Description: type_I_hlyD Location: 13994-14438 bp Feature: domain Description: type_I_hlyD Location: 14477-15101 bp Feature: domain Description: type_I_hlyD Location: 14477-15101 bp Feature: gene Location: 15646-15945 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 15649-15760 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 15649-15760 bp Feature: gene Location: 16388-16576 bp Feature: gene Location: 16823-17041 bp Feature: domain Description: PRK09678 Location: 16826-17024 bp Feature: domain Description: PRK09678 Location: 1682 6-1702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: MYXV01000545.1 Salmonella enterica subsp. enterica serovar Kintambo strain 90-0348 NODE_545_length_1445_cov_3.0521, whole genome shotgun sequence (1445 bp)
Overview 1 RT 1: 42-1020 bp Neighborhood of RT #1 [42, 1442] HTH_Tnp_1 RVT-Retrons Feature: gene Location: 42-308 bp Feature: domain Description: HTH_Tnp_1 Location: 48-255 bp Feature: domain Description: HTH_Tnp_1 Location: 48-255 bp Feature: gene Location: 468-1442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 498-1020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 498-1020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-Retrons