myRT

myRT report for GCA_002045095.1_ASM204509v1

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Seq: MYZC01000010.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_10_length_138197_cov_3.06649, whole genome shotgun sequence (138197 bp)
Overview 1 RT 1: 260-8911 bp Neighborhood of RT #1 [260, 8911] KOG0730 Peptidases_S8_Subtilisin_like_2 RVT-Retrons Feature: gene Location: 260-1246 bp Feature: domain Description: KOG0730 Location: 554-1175 bp Feature: domain Description: KOG0730 Location: 554-1 1 75 bp Feature: gene Location: 1255-3744 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 2068-3004 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 2068-3004 bp Feature: gene Location: 3848-5521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3977-4595 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3977-4595 bp Feature: gene Location: 5783-7246 bp Feature: gene Location: 7799-8911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0730 (KOG0730, AAA+-type ATPase ), Peptidases_S8_Subtilisin_like_2 (cd04847), RVT-Retrons

Seq: MYZC01000015.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_15_length_120434_cov_3.32118, whole genome shotgun sequence (120434 bp)
Overview 1 RT 1: 113-2130 bp Neighborhood of RT #1 [113, 2138] RVT-GII GIIM HNHc DUF4156 Feature: gene Location: 113-661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116-368 bp Feature: domain Description: GIIM Note: maturase Location: 422-620 bp Feature: domain Description: GIIM Note: maturase Location: 42 2 -62 0 bp Feature: gene Location: 630-1028 bp Feature: domain Description: HNHc Note: nucleases Location: 858-1020 bp Feature: domain Description: HNHc Note: nucleases Location: 858-102 0 bp Feature: gene Location: 1785-2138 bp Feature: domain Description: DUF4156 Location: 1854-2130 bp Feature: domain Description: DUF4156 Location: 1854-2 130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)

Seq: MYZC01000023.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_23_length_86142_cov_2.75675, whole genome shotgun sequence (86142 bp)
Overview 1 RT 1: 16-4751 bp Neighborhood of RT #1 [16, 4756] HTH_Tnp_1 RVT-Retrons AAA_15 PRK10550 Feature: gene Location: 16-282 bp Feature: domain Description: HTH_Tnp_1 Location: 22-229 bp Feature: domain Description: HTH_Tnp_1 Location: 22-229 bp Feature: gene Location: 442-1590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 595-1168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 595-1168 bp Feature: gene Location: 1750-3978 bp Feature: domain Description: AAA_15 Location: 1753-2761 bp Feature: domain Description: AAA_15 Location: 1753 -2761 bp Feature: gene Location: 4121-4756 bp Feature: domain Description: PRK10550 Location: 4124-4751 bp Feature: domain Description: PRK10550 Location: 4124-4751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-Retrons, AAA_15 (pfam13175), PRK10550 (tRNA dihydrouridine(16) synthase DusC)

Seq: MYZC01000024.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_24_length_84256_cov_3.50286, whole genome shotgun sequence (84256 bp)
Overview 1 RT 1: 44609-48785 bp Neighborhood of RT #1 [44609, 48785] PRK10473 RVT-Retrons Feature: gene Location: 44609-45796 bp Feature: domain Description: PRK10473 Location: 44612-45788 bp Feature: domain Description: PRK104 73 Location: 4 4 612-4 5788 bp Feature: gene Location: 46141-46350 bp Feature: gene Location: 46598-47533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46709-47294 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 6709-4 7294 bp Feature: gene Location: 47533-48495 bp Feature: gene Location: 48522-48785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons

Seq: MYZC01000037.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_37_length_37387_cov_3.57215, whole genome shotgun sequence (37387 bp)
Overview 1 RT 1: 73-4806 bp Neighborhood of RT #1 [73, 4806] RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 73-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-400 bp Feature: gene Location: 912-1166 bp Feature: gene Location: 1406-1657 bp Feature: gene Location: 2033-2326 bp Feature: gene Location: 2373-4151 bp Feature: domain Description: RVT_N Location: 2538-2772 bp Feature: domain Description: RVT_N Location: 25 38-2772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3471 bp Feature: domain Description: GIIM Note: maturase Location: 3525-3756 bp Feature: domain Description: GIIM Note: maturase Location: 35 25 -375 6 bp Feature: domain Description: HNHc Note: nucleases Location: 3966-4122 bp Feature: domain Description: HNHc Note: nucleases Location: 3966-4122 bp Feature: gene Location: 4187-4423 bp Feature: gene Location: 4480-4806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: MYZC01000006.1 Salmonella enterica subsp. enterica serovar Kintambo strain 07-0920 NODE_6_length_193844_cov_3.02207, whole genome shotgun sequence (193844 bp)
Overview 1 RT 1: 49197-54875 bp Neighborhood of RT #1 [49197, 54886] DUF5375 Prim_Zn_Ribbon COG3378 RVT-UG11 PRK09678 D Feature: gene Location: 49197-49517 bp Feature: domain Description: DUF5375 Location: 49200-49515 bp Feature: domain Description: DUF5375 Location: 49200-49515 bp Feature: gene Location: 49532-51865 bp Feature: domain Description: Prim_Zn_Ribbon Location: 49622-49730 bp Feature: domain Description: Prim_Zn_Ribbon Location: 496 22-49730 bp Feature: domain Description: COG3378 Location: 50342-51851 bp Feature: domain Description: COG3378 Location: 50342-51851 bp Feature: gene Location: 52300-53073 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52435-52888 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52435-52888 bp Feature: gene Location: 53477-53695 bp Feature: domain Description: PRK09678 Location: 53480-53678 bp Feature: domain Description: PRK096 78 Location: 53480-536 78 bp Feature: gene Location: 53786-54886 bp Feature: domain Description: D Location: 53792-54875 bp Feature: domain Description: D Location: 53792-54875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)