myRT

myRT report for GCA_002045875.1_ASM204587v1

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Seq: MYYG01000015.1 Salmonella enterica subsp. enterica serovar Kintambo strain 02-0163 NODE_15_length_106493_cov_3.7419, whole genome shotgun sequence (106493 bp)
Overview 1 RT 1: 62270-67512 bp Neighborhood of RT #1 [62270, 67559] PRK09678 RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 62270-62488 bp Feature: domain Description: PRK09678 Location: 62273-62471 bp Feature: domain Description: PRK09678 Location: 62273-62471 bp Feature: gene Location: 62735-62923 bp Feature: gene Location: 62892-63665 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 63027-63480 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 63027-63480 bp Feature: gene Location: 64208-65398 bp Feature: domain Description: type_I_hlyD Location: 64289-64733 bp Feature: domain Description: type_I_hlyD Location: 64289-64733 bp Feature: domain Description: type_I_hlyD Location: 64772-65396 bp Feature: domain Description: type_I_hlyD Location: 64772-65396 bp Feature: gene Location: 65379-67559 bp Feature: domain Description: type_I_sec_LssB Location: 65439-67512 bp Feature: domain Description: type_I_sec_LssB Location: 65439-6751 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)

Seq: MYYG01000018.1 Salmonella enterica subsp. enterica serovar Kintambo strain 02-0163 NODE_18_length_96114_cov_3.43822, whole genome shotgun sequence (96114 bp)
Overview 1 RT 1: 241-5346 bp Neighborhood of RT #1 [241, 5351] HTH_Tnp_1 RVT-Retrons AAA_15 PRK10550 Feature: gene Location: 241-507 bp Feature: gene Location: 611-877 bp Feature: domain Description: HTH_Tnp_1 Location: 617-824 bp Feature: domain Description: HTH_Tnp_1 Location: 617-82 4 bp Feature: gene Location: 1037-2185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1190-1763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1190-1763 bp Feature: gene Location: 2345-4573 bp Feature: domain Description: AAA_15 Location: 2348-3356 bp Feature: domain Description: AAA_15 Location: 2 348-3356 bp Feature: gene Location: 4716-5351 bp Feature: domain Description: PRK10550 Location: 4719-5346 bp Feature: domain Description: PRK10550 Location: 4719-5346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-Retrons, AAA_15 (pfam13175), PRK10550 (tRNA dihydrouridine(16) synthase DusC)

Seq: MYYG01000009.1 Salmonella enterica subsp. enterica serovar Kintambo strain 02-0163 NODE_9_length_140577_cov_4.56851, whole genome shotgun sequence (140577 bp)
Overview 1 RT 1: 47914-56652 bp Neighborhood of RT #1 [47914, 56660] groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII RVT-GII GIIM HNHc DUF4156 Feature: gene Location: 47914-49560 bp Feature: domain Description: groEL Location: 47920-49546 bp Feature: domain Description: groEL Location: 47920-49546 bp Feature: gene Location: 49901-50227 bp Feature: gene Location: 50658-52334 bp Feature: domain Description: RVT_N Location: 50721-50955 bp Feature: domain Description: RVT_N Location: 50721-50955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51009-51654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51009-51654 bp Feature: domain Description: GIIM Note: maturase Location: 51708-51939 bp Feature: domain Description: GIIM Note: maturase Location: 51708-5193 9 bp Feature: domain Description: HNHc Note: nucleases Location: 52149-52305 bp Feature: domain Description: HNHc Note: nucleases Location: 52149-523 05 bp Feature: gene Location: 52381-52674 bp Feature: gene Location: 53050-53301 bp Feature: gene Location: 53906-54040 bp Feature: domain Description: RVT_N Location: 53957-54035 bp Feature: domain Description: RVT_N Location: 53 957-5403 5 bp Feature: gene Location: 54155-54664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54245-54614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54245-54614 bp Feature: gene Location: 54721-55182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54724-54889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54724-54889 bp Feature: domain Description: GIIM Note: maturase Location: 54943-55141 bp Feature: domain Description: GIIM Note: maturase Location: 54943 -55141 bp Feature: gene Location: 55358-55549 bp Feature: domain Description: HNHc Note: nucleases Location: 55382-55541 bp Feature: domain Description: HNHc Note: nucleases Location: 553 82-55541 bp Feature: gene Location: 56307-56660 bp Feature: domain Description: DUF4156 Location: 56376-56652 bp Feature: domain Description: DUF4156 Location: 563 76-56652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)