myRT

myRT report for GCA_002045995.1_ASM204599v1

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Seq: MYYU01000015.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_15_length_120434_cov_3.72032, whole genome shotgun sequence (120434 bp)
Overview 1 RT 1: 118297-120281 bp Neighborhood of RT #1 [118297, 120322] DUF4156 HNHc RVT-GII GIIM Feature: gene Location: 118297-118662 bp Feature: domain Description: DUF4156 Location: 118378-118654 bp Feature: domain Description: DUF41 56 Location: 1 1 8378-1 1 8654 bp Feature: gene Location: 119407-119805 bp Feature: domain Description: HNHc Note: nucleases Location: 119635-119797 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 9635-1 1 9797 bp Feature: gene Location: 119774-120322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119777-120029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9777-1 20029 bp Feature: domain Description: GIIM Note: maturase Location: 120083-120281 bp Feature: domain Description: GIIM Note: maturase Location: 1 20083-1 20281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), HNHc (smart00507), RVT-GII, GIIM (pfam08388)

Seq: MYYU01000017.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_17_length_115811_cov_3.29942, whole genome shotgun sequence (115811 bp)
Overview 1 RT 1: 49069-54747 bp Neighborhood of RT #1 [49069, 54758] DUF5375 Prim_Zn_Ribbon COG3378 RVT-UG11 PRK09678 D Feature: gene Location: 49069-49389 bp Feature: domain Description: DUF5375 Location: 49072-49387 bp Feature: domain Description: DUF5375 Location: 49072 -49387 bp Feature: gene Location: 49404-51737 bp Feature: domain Description: Prim_Zn_Ribbon Location: 49494-49602 bp Feature: domain Description: Prim_Zn_Ribbon Location: 49494-49602 bp Feature: domain Description: COG3378 Location: 50214-51723 bp Feature: domain Description: COG3378 Location: 502 14-5172 3 bp Feature: gene Location: 52172-52945 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52307-52760 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52 307-52 760 bp Feature: gene Location: 53349-53567 bp Feature: domain Description: PRK09678 Location: 53352-53550 bp Feature: domain Description: PRK09678 Location: 53352 -53550 bp Feature: gene Location: 53658-54758 bp Feature: domain Description: D Location: 53664-54747 bp Feature: domain Description: D Location: 53664-54747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: MYYU01000024.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_24_length_91141_cov_3.10085, whole genome shotgun sequence (91141 bp)
Overview 1 RT 1: 4439-9544 bp Neighborhood of RT #1 [4439, 9549] HTH_Tnp_1 RVT-Retrons AAA_15 PRK10550 Feature: gene Location: 4439-4705 bp Feature: gene Location: 4809-5075 bp Feature: domain Description: HTH_Tnp_1 Location: 4815-5022 bp Feature: domain Description: HTH_Tnp_1 Location: 4815-5022 bp Feature: gene Location: 5235-6383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5388-5961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 88-5961 bp Feature: gene Location: 6543-8771 bp Feature: domain Description: AAA_15 Location: 6546-7554 bp Feature: domain Description: AAA_15 Location: 6546-7554 bp Feature: gene Location: 8914-9549 bp Feature: domain Description: PRK10550 Location: 8917-9544 bp Feature: domain Description: PRK10550 Location: 8917-9544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-Retrons, AAA_15 (pfam13175), PRK10550 (tRNA dihydrouridine(16) synthase DusC)

Seq: MYYU01000026.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_26_length_81681_cov_3.94412, whole genome shotgun sequence (81681 bp)
Overview 1 RT 1: 32120-37045 bp Neighborhood of RT #1 [32120, 37053] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 32120-32842 bp Feature: domain Description: INT_P4_C Location: 32240-32771 bp Feature: domain Description: INT_P4 _C Location: 3224 0-32771 bp Feature: gene Location: 33167-34129 bp Feature: gene Location: 34129-35064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34240-34825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 24 0-34 825 bp Feature: gene Location: 35312-35521 bp Feature: gene Location: 35866-37053 bp Feature: domain Description: PRK10473 Location: 35869-37045 bp Feature: domain Description: PRK104 73 Location: 35869-3704 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: MYYU01000042.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_42_length_37387_cov_4.22455, whole genome shotgun sequence (37387 bp)
Overview 1 RT 1: 73-4806 bp Neighborhood of RT #1 [73, 4806] RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 73-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76-400 bp Feature: gene Location: 912-1166 bp Feature: gene Location: 1406-1657 bp Feature: gene Location: 2033-2326 bp Feature: gene Location: 2373-4151 bp Feature: domain Description: RVT_N Location: 2538-2772 bp Feature: domain Description: RVT_N Location: 25 38-2772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3471 bp Feature: domain Description: GIIM Note: maturase Location: 3525-3756 bp Feature: domain Description: GIIM Note: maturase Location: 35 25 -375 6 bp Feature: domain Description: HNHc Note: nucleases Location: 3966-4122 bp Feature: domain Description: HNHc Note: nucleases Location: 3966-4122 bp Feature: gene Location: 4187-4423 bp Feature: gene Location: 4480-4806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: MYYU01000009.1 Salmonella enterica subsp. enterica serovar Kintambo strain 2010K-2376 NODE_9_length_138197_cov_3.44999, whole genome shotgun sequence (138197 bp)
Overview 1 RT 1: 260-8911 bp Neighborhood of RT #1 [260, 8911] KOG0730 Peptidases_S8_Subtilisin_like_2 RVT-Retrons Feature: gene Location: 260-1246 bp Feature: domain Description: KOG0730 Location: 554-1175 bp Feature: domain Description: KOG0730 Location: 554-1175 bp Feature: gene Location: 1255-3744 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 2068-3004 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 206 8-3004 bp Feature: gene Location: 3848-5521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3977-4595 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3977-4595 bp Feature: gene Location: 5783-7246 bp Feature: gene Location: 7799-8911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0730 (KOG0730, AAA+-type ATPase ), Peptidases_S8_Subtilisin_like_2 (cd04847), RVT-Retrons