myRT

myRT report for GCA_002047645.1_ASM204764v1

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Seq: MZEE01000021.1 Salmonella enterica subsp. enterica serovar Urbana strain 2010K-2580 NODE_21_length_73312_cov_3.45096, whole genome shotgun sequence (73312 bp)
Overview 1 RT 1: 52243-55209 bp Neighborhood of RT #1 [52243, 55373] RVT_N RVT-GII YkfC HNHc PRK13720 Feature: gene Location: 52243-52560 bp Feature: gene Location: 52670-52819 bp Feature: gene Location: 52906-54579 bp Feature: domain Description: RVT_N Location: 52966-53206 bp Feature: domain Description: RVT_N Location: 52966-53206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53254-53896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53254-53896 bp Feature: domain Description: YkfC Location: 54025-54199 bp Feature: domain Description: YkfC Location: 54025-541 99 bp Feature: domain Description: HNHc Note: nucleases Location: 54394-54556 bp Feature: domain Description: HNHc Note: nucleases Location: 54394-54556 bp Feature: gene Location: 54598-54753 bp Feature: gene Location: 54999-55373 bp Feature: domain Description: PRK13720 Location: 55002-55209 bp Feature: domain Description: PRK1 3720 Location: 55002-55209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK13720 (modulator of post-segregation killing protein; Provisional)

Seq: MZEE01000034.1 Salmonella enterica subsp. enterica serovar Urbana strain 2010K-2580 NODE_34_length_27972_cov_3.60109, whole genome shotgun sequence (27972 bp)
Overview 1 RT 1: 24580-26310 bp Neighborhood of RT #1 [24580, 26351] DEDD_Tnp_IS110 RVT-GII DDE_Tnp_IS66 Feature: gene Location: 24580-24735 bp Feature: gene Location: 24956-25252 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 25058-25106 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 5058-2 5106 bp Feature: gene Location: 25432-25665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25444-25591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5444-2 5591 bp Feature: gene Location: 25674-25898 bp Feature: gene Location: 25908-26351 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26076-26310 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 6076-2 6310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, DDE_Tnp_IS66 (pfam03050)