myRT

myRT report for GCA_002047945.1_ASM204794v1

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Seq: MZAL01000021.1 Salmonella enterica subsp. enterica serovar Baildon strain 96-0126 NODE_21_length_59810_cov_6.22105, whole genome shotgun sequence (59810 bp)
Overview 1 RT 1: 58762-59650 bp Neighborhood of RT #1 [58762, 59808] PRK10173 PRK10173 RVT-GII Feature: gene Location: 58762-59211 bp Feature: domain Description: PRK10173 Location: 58765-59203 bp Feature: domain Description: PRK1 01 73 Location: 58765-59203 bp Feature: gene Location: 59195-59506 bp Feature: domain Description: PRK10173 Location: 59198-59417 bp Feature: domain Description: PRK1 01 73 Location: 591 98-5941 7 bp Feature: gene Location: 59545-59808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59578-59650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59578-59650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: MZAL01000028.1 Salmonella enterica subsp. enterica serovar Baildon strain 96-0126 NODE_28_length_35087_cov_6.2096, whole genome shotgun sequence (35087 bp)
Overview 1 RT 1: 3-2154 bp Neighborhood of RT #1 [3, 2192] RVT-GII RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-492 bp Feature: gene Location: 591-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-768 bp Feature: domain Description: GIIM Note: maturase Location: 843-1062 bp Feature: domain Description: GIIM Note: maturase Location: 843-1062 bp Feature: gene Location: 1403-1759 bp Feature: domain Description: PHA02517 Location: 1406-1715 bp Feature: domain Description: PHA02 517 Location: 1406-1715 bp Feature: gene Location: 1788-2192 bp Feature: domain Description: InsE Location: 1818-2154 bp Feature: domain Description: InsE Location: 1818-2 154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MZAL01000045.1 Salmonella enterica subsp. enterica serovar Baildon strain 96-0126 NODE_45_length_1329_cov_12.8837, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 3-1263 bp Neighborhood of RT #1 [3, 1328] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-3 3 0 bp Feature: gene Location: 921-1328 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: MZAL01000009.1 Salmonella enterica subsp. enterica serovar Baildon strain 96-0126 NODE_9_length_201141_cov_4.01032, whole genome shotgun sequence (201141 bp)
Overview 1 RT 1: 128533-134077 bp Neighborhood of RT #1 [128533, 134118] PRK10550 AAA_15 RVT-Retrons HTH_Tnp_1 Tra5 Feature: gene Location: 128533-129168 bp Feature: domain Description: PRK10550 Location: 128536-129163 bp Feature: domain Description: PRK10550 Location: 128536-129163 bp Feature: gene Location: 129311-131539 bp Feature: domain Description: AAA_15 Location: 129314-130322 bp Feature: domain Description: AAA_15 Location: 129314 -130322 bp Feature: gene Location: 131699-132847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131852-132425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131852-1324 25 bp Feature: gene Location: 133007-133273 bp Feature: domain Description: HTH_Tnp_1 Location: 133013-133220 bp Feature: domain Description: HTH_Tnp_1 Location: 133013-133220 bp Feature: gene Location: 133495-134118 bp Feature: domain Description: Tra5 Location: 133516-134077 bp Feature: domain Description: Tra5 Location: 133516-134 077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10550 (tRNA dihydrouridine(16) synthase DusC), AAA_15 (pfam13175), RVT-Retrons, HTH_Tnp_1 (pfam01527), Tra5 (COG2801)