myRT

myRT report for GCA_002048035.1_ASM204803v1

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Seq: MZBC01000025.1 Salmonella enterica subsp. enterica serovar Ealing strain 06-0782 NODE_25_length_46524_cov_5.67122, whole genome shotgun sequence (46524 bp)
Overview 1 RT 1: 3240-7578 bp Neighborhood of RT #1 [3240, 7637] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 3240-4064 bp Feature: domain Description: PRK13699 Location: 3453-4062 bp Feature: domain Description: PRK1 3699 Location: 3453-4062 bp Feature: gene Location: 4315-4449 bp Feature: gene Location: 4474-6174 bp Feature: RT Description: RVT_N Location: 4528-4771 bp Feature: RT Description: RVT_N Location: 4528-4771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4816-5452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 6-5452 bp Feature: domain Description: GIIM Note: maturase Location: 5503-5737 bp Feature: domain Description: GIIM Note: maturase Location: 5503-5737 bp Feature: domain Description: HNHc Note: nucleases Location: 5968-6118 bp Feature: domain Description: HNHc Note: nucleases Location: 5968-61 1 8 bp Feature: gene Location: 6489-6641 bp Feature: gene Location: 6711-7637 bp Feature: domain Description: DUF1281 Location: 6804-7332 bp Feature: domain Description: DUF1 281 Location: 6804-7332 bp Feature: domain Description: DUF1281_C Location: 7338-7578 bp Feature: domain Description: DUF1 281 _C Location: 7338-7578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: MZBC01000005.1 Salmonella enterica subsp. enterica serovar Ealing strain 06-0782 NODE_5_length_331141_cov_3.69503, whole genome shotgun sequence (331141 bp)
Overview 1 RT 1: 1-5422 bp Neighborhood of RT #1 [1, 5427] Tra5 HTH_Tnp_1 RVT-Retrons AAA_15 PRK10550 Feature: gene Location: 1-540 bp Feature: domain Description: Tra5 Location: 16-535 bp Feature: domain Description: Tra5 Location: 16-535 bp Feature: gene Location: 687-953 bp Feature: domain Description: HTH_Tnp_1 Location: 693-900 bp Feature: domain Description: HTH_Tnp_1 Location: 693-900 bp Feature: gene Location: 1113-2261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1266-1839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 66-1839 bp Feature: gene Location: 2421-4649 bp Feature: domain Description: AAA_15 Location: 2424-3432 bp Feature: domain Description: AAA_15 Location: 2 42 4-3432 bp Feature: gene Location: 4792-5427 bp Feature: domain Description: PRK10550 Location: 4795-5422 bp Feature: domain Description: PRK10550 Location: 4795-542 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Tra5 (COG2801), AAA_15 (pfam13175), PRK10550 (tRNA dihydrouridine(16) synthase DusC)