myRT

myRT report for GCA_002048325.1_ASM204832v1

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Seq: MZCY01000010.1 Salmonella enterica subsp. enterica serovar Newport strain 05-0484 NODE_10_length_193236_cov_4.94085, whole genome shotgun sequence (193236 bp)
Overview 1 RT 1: 19902-24281 bp Neighborhood of RT #1 [19902, 24304] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 19902-20117 bp Feature: gene Location: 20208-20489 bp Feature: domain Description: HTH_XRE Location: 20223-20388 bp Feature: domain Description: HTH_XRE Location: 20223-20388 bp Feature: gene Location: 20650-21582 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20662-21175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20662-21 1 75 bp Feature: gene Location: 21659-23161 bp Feature: domain Description: PRK13889 Location: 21662-22241 bp Feature: domain Description: PRK1 3889 Location: 21 662-22241 bp Feature: gene Location: 23993-24304 bp Feature: domain Description: TraD Location: 24107-24281 bp Feature: domain Description: TraD Location: 241 07-24281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: MZCY01000027.1 Salmonella enterica subsp. enterica serovar Newport strain 05-0484 NODE_27_length_56235_cov_5.03824, whole genome shotgun sequence (56235 bp)
Overview 1 RT 1: 53763-56104 bp Neighborhood of RT #1 [53763, 56104] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 53763-54017 bp Feature: domain Description: DDE_Tnp_IS66 Location: 53781-53862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 53781-53862 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 53883-53994 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 53883-53994 bp Feature: gene Location: 54142-54303 bp Feature: gene Location: 54401-55837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54797-55463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54797-55463 bp Feature: domain Description: GIIM Note: maturase Location: 55529-55739 bp Feature: domain Description: GIIM Note: maturase Location: 5552 9-55739 bp Feature: gene Location: 55913-56104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: MZCY01000004.1 Salmonella enterica subsp. enterica serovar Newport strain 05-0484 NODE_4_length_275201_cov_4.91404, whole genome shotgun sequence (275201 bp)
Overview 1 RT 1: 68-1510 bp Neighborhood of RT #1 [68, 1510] RVT-GII RVT_N Feature: gene Location: 68-337 bp Feature: gene Location: 392-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 95-857 bp Feature: gene Location: 940-1269 bp Feature: domain Description: RVT_N Location: 994-1237 bp Feature: domain Description: RVT_N Location: 994-123 7 bp Feature: gene Location: 1313-1510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: MZCY01000050.1 Salmonella enterica subsp. enterica serovar Newport strain 05-0484 NODE_50_length_3997_cov_6.30997, whole genome shotgun sequence (3997 bp)
Overview 1 RT 1: 166-3359 bp Neighborhood of RT #1 [166, 3359] RVT-GII GIIM RVT-GII GIIM HNH Feature: gene Location: 166-1575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1177 bp Feature: domain Description: GIIM Note: maturase Location: 1264-1477 bp Feature: domain Description: GIIM Note: maturase Location: 1264 -14 77 bp Feature: gene Location: 1683-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-1788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-1788 bp Feature: domain Description: GIIM Note: maturase Location: 1842-2073 bp Feature: domain Description: GIIM Note: maturase Location: 184 2-2073 bp Feature: domain Description: HNH Note: nucleases Location: 2331-2466 bp Feature: domain Description: HNH Note: nucleases Location: 2331-24 66 bp Feature: gene Location: 2530-3027 bp Feature: gene Location: 3126-3359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)