myRT

myRT report for GCA_002049395.1_ASM204939v1

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Seq: BDLR01000025.1 Carboxydocella sp. JDF658 DNA, contig: JDF658contig025, whole genome shotgun sequence (77694 bp)
Overview 1 RT 1: 20823-26591 bp Neighborhood of RT #1 [20823, 26608] SLH SLH SLH SLH SLH RVT-GII GIIM RfbD Feature: gene Location: 20823-21593 bp Ori: GAW31234.1 Feature: domain Description: SLH Location: 21063-21189 bp Feature: domain Description: SLH Location: 21 063-21 1 89 bp Feature: domain Description: SLH Location: 21240-21369 bp Feature: domain Description: SLH Location: 21 240-21 369 bp Feature: domain Description: SLH Location: 21435-21555 bp Feature: domain Description: SLH Location: 21 435-21 555 bp Feature: gene Location: 21802-24297 bp Ori: GAW31235.1 Feature: domain Description: SLH Location: 21898-21991 bp Feature: domain Description: SLH Location: 21 898-21 991 bp Feature: domain Description: SLH Location: 22054-22183 bp Feature: domain Description: SLH Location: 22054-221 83 bp Feature: gene Location: 24521-24976 bp Ori: GAW31236.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24800-24971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24800-24971 bp Feature: gene Location: 24921-25427 bp Ori: GAW31237.1 Feature: domain Description: GIIM Note: maturase Location: 25101-25305 bp Feature: domain Description: GIIM Note: maturase Location: 251 01 -25305 bp Feature: gene Location: 25748-26608 bp Ori: GAW31238.1 Feature: domain Description: RfbD Location: 25760-26591 bp Feature: domain Description: RfbD Location: 25760-26591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), RVT-GII, GIIM (pfam08388), RfbD (COG1091)

Seq: BDLR01000056.1 Carboxydocella sp. JDF658 DNA, contig: JDF658contig056, whole genome shotgun sequence (2568 bp)
Overview 1 RT 1: 277-2568 bp Neighborhood of RT #1 [277, 2568] RVT-GII GIIM Feature: gene Location: 277-1692 bp Ori: GAW32067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631-12 49 bp Feature: domain Description: GIIM Note: maturase Location: 1300-1528 bp Feature: domain Description: GIIM Note: maturase Location: 1300-152 8 bp Feature: gene Location: 2479-2568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDLR01000066.1 Carboxydocella sp. JDF658 DNA, contig: JDF658contig066, whole genome shotgun sequence (21079 bp)
Overview 1 RT 1: 1-4418 bp Neighborhood of RT #1 [1, 5065] SelD DUF45 RVT-GII PRK09183 COG4584 Feature: gene Location: 1-666 bp Ori: GAW32197.1 Feature: domain Description: SelD Location: 7-631 bp Feature: domain Description: SelD Location: 7-63 1 bp Feature: gene Location: 694-1368 bp Ori: GAW32198.1 Feature: domain Description: DUF45 Location: 736-1342 bp Feature: domain Description: DUF45 Location: 73 6-13 42 bp Feature: gene Location: 1604-2200 bp Ori: GAW32199.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610-1856 bp Feature: gene Location: 3321-3566 bp Ori: GAW32200.1 Feature: domain Description: PRK09183 Location: 3381-3534 bp Feature: domain Description: PRK09183 Location: 3 3 81-3 53 4 bp Feature: gene Location: 3554-5065 bp Ori: GAW32201.1 Feature: domain Description: COG4584 Location: 3608-4418 bp Feature: domain Description: COG4584 Location: 3 608-4418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SelD (COG0709), DUF45 (pfam01863), RVT-GII, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )