myRT

myRT report for GCA_002050315.1_ASM205031v1

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Seq: MWTE01000118.1 Candidatus Brocadia sp. UTAMX2 contig_108, whole genome shotgun sequence (10518 bp)
Overview 1 RT 1: 1139-5085 bp Neighborhood of RT #1 [1139, 5132] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III bioF Feature: gene Location: 1139-3493 bp Ori: OQY98477.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1343-1964 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 343-1 964 bp Feature: domain Description: Cas1_I-II-III Location: 2477-3455 bp Feature: domain Description: Cas1 _I-II-III Location: 2477-3455 bp Feature: gene Location: 3580-3855 bp Ori: OQY98478.1 Feature: domain Description: Cas2_I_II_III Location: 3589-3814 bp Feature: domain Description: Cas2_I_II_III Location: 3589-381 4 bp Feature: gene Location: 3948-5132 bp Ori: OQY98479.1 Feature: domain Description: bioF Location: 4026-5085 bp Feature: domain Description: bioF Location: 4026-5085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), bioF (TIGR00858)

Seq: MWTE01000140.1 Candidatus Brocadia sp. UTAMX2 contig_161, whole genome shotgun sequence (82024 bp)
Overview 1 RT 1: 60671-68669 bp Neighborhood of RT #1 [60671, 68680] Big_7 Big_7 Laminin_G_3 COG5421 RVT-GII GIIM GT4_PimA-like Feature: gene Location: 60671-63934 bp Ori: OQY97664.1 Feature: domain Description: Big_7 Location: 62471-62642 bp Feature: domain Description: Big_7 Location: 62 471-62 642 bp Feature: domain Description: Big_7 Location: 63062-63320 bp Feature: domain Description: Big_7 Location: 63062 -6332 0 bp Feature: domain Description: Laminin_G_3 Location: 63476-63914 bp Feature: domain Description: Laminin_G_3 Location: 63476-63914 bp Feature: gene Location: 63940-64524 bp Ori: OQY97665.1 Feature: domain Description: COG5421 Location: 64165-64441 bp Feature: domain Description: COG542 1 Location: 64165-64441 bp Feature: gene Location: 65115-66353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65325-65982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6532 5-65982 bp Feature: domain Description: GIIM Note: maturase Location: 66069-66282 bp Feature: domain Description: GIIM Note: maturase Location: 66069-662 82 bp Feature: gene Location: 67019-67504 bp Feature: gene Location: 67598-68680 bp Ori: OQY97667.1 Feature: domain Description: GT4_PimA-like Location: 67640-68669 bp Feature: domain Description: GT4_PimA-like Location: 67640-68669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_7 (pfam17957), Laminin_G_3 (pfam13385), COG5421 (Transposase ), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801)

Seq: MWTE01000123.1 Candidatus Brocadia sp. UTAMX2 contig_997, whole genome shotgun sequence (43970 bp)
Overview 1 RT 1: 35543-41645 bp Neighborhood of RT #1 [35543, 41791] TIR_2 pfam03781 Avd_like RVT-DGRs Slp PRK14902 Feature: gene Location: 35543-37189 bp Ori: OQY98364.1 Feature: domain Description: TIR_2 Location: 35654-35990 bp Feature: domain Description: TIR_2 Location: 3 5654-3 5990 bp Feature: domain Description: pfam03781 Location: 36344-37175 bp Feature: domain Description: pfam03 781 Location: 3 63 44-3 7175 bp Feature: gene Location: 37267-37692 bp Ori: OQY98365.1 Feature: domain Description: Avd_like Location: 37363-37657 bp Feature: domain Description: Avd_like Location: 3 73 63 -3 7657 bp Feature: gene Location: 37598-38815 bp Ori: OQY98366.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37892-38531 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 7892-3 853 1 bp Feature: gene Location: 39707-40297 bp Ori: OQY98367.1 Feature: domain Description: Slp Location: 39776-40235 bp Feature: domain Description: Slp Location: 3 9776-4023 5 bp Feature: gene Location: 40298-41791 bp Ori: OQY98368.1 Feature: domain Description: PRK14902 Location: 40322-41645 bp Feature: domain Description: PRK14902 Location: 403 22-41645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, Slp (pfam03843), PRK14902 (16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB)

Seq: MWTE01000027.1 Candidatus Brocadia sp. UTAMX2 contig_852, whole genome shotgun sequence (40161 bp)
Overview 1 RT 1: 4995-8317 bp Neighborhood of RT #1 [4995, 8328] RVT-CRISPR-like VapB_antitoxin PIN_MtVapC3-like Feature: gene Location: 4995-5894 bp Feature: gene Location: 5906-6685 bp Feature: gene Location: 6685-7608 bp Ori: OQZ01542.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6874-7471 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6874 -74 71 bp Feature: gene Location: 7731-7940 bp Ori: OQZ01543.1 Feature: domain Description: VapB_antitoxin Location: 7737-7860 bp Feature: domain Description: VapB_antitoxin Location: 7737-7860 bp Feature: gene Location: 7924-8328 bp Ori: OQZ01544.1 Feature: domain Description: PIN_MtVapC3-like Location: 7948-8317 bp Feature: domain Description: PIN_MtVapC3-like Location: 794 8-8317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, VapB_antitoxin (pfam09957), PIN_MtVapC3-like (cd18767)

Seq: MWTE01000063.1 Candidatus Brocadia sp. UTAMX2 contig_100, whole genome shotgun sequence (89828 bp)
Overview 1 RT 1: 58443-61484 bp Neighborhood of RT #1 [58443, 61543] DUF2281 HicB RVT-DGRs Avd_like HRDC Feature: gene Location: 58443-58661 bp Ori: OQZ00161.1 Feature: domain Description: DUF2281 Location: 58473-58551 bp Feature: domain Description: DUF2281 Location: 5 8473-5 85 5 1 bp Feature: gene Location: 58966-59181 bp Ori: OQZ00162.1 Feature: domain Description: HicB Location: 58975-59161 bp Feature: domain Description: HicB Location: 5 8975 -5 9161 bp Feature: gene Location: 59702-60724 bp Ori: OQZ00163.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59912-60500 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 9912-605 00 bp Feature: gene Location: 60712-61122 bp Ori: OQZ00164.1 Feature: domain Description: Avd_like Location: 60805-61114 bp Feature: domain Description: Avd_like Location: 60805 -61114 bp Feature: gene Location: 61073-61543 bp Ori: OQZ00165.1 Feature: domain Description: HRDC Location: 61292-61484 bp Feature: domain Description: HRDC Location: 61292-61484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2281 (pfam10047), HicB (pfam05534), RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: MWTE01000007.1 Candidatus Brocadia sp. UTAMX2 contig_59, whole genome shotgun sequence (20649 bp)
Overview 1 RT 1: 1227-7035 bp Neighborhood of RT #1 [1227, 7040] RVT-GII GIIM MATE_MurJ_like GapA Feature: gene Location: 1227-1517 bp Feature: gene Location: 2227-2442 bp Feature: gene Location: 3019-3663 bp Ori: OQZ02851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3022-3292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3022-3292 bp Feature: domain Description: GIIM Note: maturase Location: 3379-3592 bp Feature: domain Description: GIIM Note: maturase Location: 3379-3592 bp Feature: gene Location: 3849-5468 bp Ori: OQZ02852.1 Feature: domain Description: MATE_MurJ_like Location: 3894-5214 bp Feature: domain Description: MATE_MurJ_like Location: 3894-5214 bp Feature: gene Location: 6039-7040 bp Ori: OQZ02853.1 Feature: domain Description: GapA Location: 6048-7035 bp Feature: domain Description: GapA Location: 6 048-7035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MATE_MurJ_like (cd13123), GapA (COG0057)

Seq: MWTE01000138.1 Candidatus Brocadia sp. UTAMX2 contig_2160, whole genome shotgun sequence (8752 bp)
Overview 1 RT 1: 617-4480 bp Neighborhood of RT #1 [617, 4491] RVT-CRISPR cas1_DVULG Cas_Cas1 YbbK YbgA Feature: gene Location: 617-916 bp Feature: gene Location: 955-2727 bp Ori: OQY97716.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1729-2425 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17 29-2425 bp Feature: domain Description: cas1_DVULG Location: 2506-2683 bp Feature: domain Description: cas1_DVULG Location: 2506-2683 bp Feature: gene Location: 2661-3473 bp Ori: OQY97717.1 Feature: domain Description: Cas_Cas1 Location: 2679-3345 bp Feature: domain Description: Cas_Cas1 Location: 267 9-3345 bp Feature: gene Location: 3517-4491 bp Ori: OQY97718.1 Feature: domain Description: YbbK Location: 3556-4006 bp Feature: domain Description: YbbK Location: 3556-4006 bp Feature: domain Description: YbgA Location: 4012-4480 bp Feature: domain Description: YbgA Location: 4012-4480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1_DVULG (TIGR03640), Cas_Cas1 (pfam01867), YbbK (COG1683), YbgA (COG3272)