myRT

myRT report for GCA_002052065.1_ASM205206v1

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Seq: MYIX01000001.1 Salmonella enterica strain BCW_5843 NODE_1_length_467439_cov_4.02912, whole genome shotgun sequence (467439 bp)
Overview 1 RT 1: 2691-8996 bp Neighborhood of RT #1 [2691, 8998] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 2691-4391 bp Feature: domain Description: 5 Location: 3915-4209 bp Feature: domain Description: 5 Location: 391 5-4209 bp Feature: gene Location: 4521-4688 bp Feature: gene Location: 5298-6062 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5421-5874 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 5421 -5874 bp Feature: gene Location: 6386-6892 bp Feature: domain Description: PRK10201 Location: 6389-6887 bp Feature: domain Description: PRK1 0201 Location: 6389-6887 bp Feature: gene Location: 7016-8998 bp Feature: domain Description: PRK05658 Location: 7154-8996 bp Feature: domain Description: PRK05658 Location: 71 54-8996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: MYIX01000022.1 Salmonella enterica strain BCW_5843 NODE_22_length_81443_cov_4.22837, whole genome shotgun sequence (81443 bp)
Overview 1 RT 1: 31904-36829 bp Neighborhood of RT #1 [31904, 36837] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31904-32626 bp Feature: domain Description: INT_P4_C Location: 32024-32555 bp Feature: domain Description: INT_P4_C Location: 32 02 4-32 555 bp Feature: gene Location: 32951-33913 bp Feature: gene Location: 33913-34848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34024-34609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3402 4-34609 bp Feature: gene Location: 35096-35305 bp Feature: gene Location: 35650-36837 bp Feature: domain Description: PRK10473 Location: 35653-36829 bp Feature: domain Description: PRK10473 Location: 35653-3682 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)