myRT

myRT report for GCA_002052255.1_ASM205225v1

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Seq: MYJI01000012.1 Salmonella enterica strain BCW_5832 NODE_12_length_139586_cov_2.18995, whole genome shotgun sequence (139586 bp)
Overview 1 RT 1: 47650-56388 bp Neighborhood of RT #1 [47650, 56396] groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII RVT-GII GIIM HNHc DUF4156 Feature: gene Location: 47650-49296 bp Feature: domain Description: groEL Location: 47656-49282 bp Feature: domain Description: groEL Location: 47656-49282 bp Feature: gene Location: 49637-49963 bp Feature: gene Location: 50394-52070 bp Feature: domain Description: RVT_N Location: 50457-50691 bp Feature: domain Description: RVT_N Location: 50457-50691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50745-51390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50745-51 390 bp Feature: domain Description: GIIM Note: maturase Location: 51444-51675 bp Feature: domain Description: GIIM Note: maturase Location: 51 444-51 675 bp Feature: domain Description: HNHc Note: nucleases Location: 51885-52041 bp Feature: domain Description: HNHc Note: nucleases Location: 51 885-52041 bp Feature: gene Location: 52117-52410 bp Feature: gene Location: 52786-53037 bp Feature: gene Location: 53642-53776 bp Feature: domain Description: RVT_N Location: 53693-53771 bp Feature: domain Description: RVT_N Location: 53693-53771 bp Feature: gene Location: 53891-54400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53981-54350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53981 -54350 bp Feature: gene Location: 54457-54918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54460-54625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54460-54625 bp Feature: domain Description: GIIM Note: maturase Location: 54679-54877 bp Feature: domain Description: GIIM Note: maturase Location: 54679-54877 bp Feature: gene Location: 55094-55285 bp Feature: domain Description: HNHc Note: nucleases Location: 55118-55277 bp Feature: domain Description: HNHc Note: nucleases Location: 551 1 8-55277 bp Feature: gene Location: 56043-56396 bp Feature: domain Description: DUF4156 Location: 56112-56388 bp Feature: domain Description: DUF41 56 Location: 561 1 2-56388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)

Seq: MYJI01000018.1 Salmonella enterica strain BCW_5832 NODE_18_length_99267_cov_1.71076, whole genome shotgun sequence (99267 bp)
Overview 1 RT 1: 91083-96632 bp Neighborhood of RT #1 [91083, 96667] PRK10550 AAA_15 RVT-Retrons HTH_Tnp_1 Tra5 Feature: gene Location: 91083-91718 bp Feature: domain Description: PRK10550 Location: 91086-91713 bp Feature: domain Description: PRK10550 Location: 91086-91713 bp Feature: gene Location: 91861-94089 bp Feature: domain Description: AAA_15 Location: 91864-92872 bp Feature: domain Description: AAA_15 Location: 91864-92 872 bp Feature: gene Location: 94249-95397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94402-94975 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94402 -94975 bp Feature: gene Location: 95557-95823 bp Feature: domain Description: HTH_Tnp_1 Location: 95563-95770 bp Feature: domain Description: HTH_Tnp_1 Location: 95563-95770 bp Feature: gene Location: 96044-96667 bp Feature: domain Description: Tra5 Location: 96065-96632 bp Feature: domain Description: Tra5 Location: 96065-96632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10550 (tRNA dihydrouridine(16) synthase DusC), AAA_15 (pfam13175), RVT-Retrons, HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: MYJI01000003.1 Salmonella enterica strain BCW_5832 NODE_3_length_304987_cov_1.92839, whole genome shotgun sequence (304987 bp)
Overview 1 RT 1: 260756-265998 bp Neighborhood of RT #1 [260756, 266045] PRK09678 RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 260756-260974 bp Feature: domain Description: PRK09678 Location: 260759-260957 bp Feature: domain Description: PRK09678 Location: 260759-260957 bp Feature: gene Location: 261221-261409 bp Feature: gene Location: 261378-262151 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 261513-261966 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 261513 -261966 bp Feature: gene Location: 262694-263884 bp Feature: domain Description: type_I_hlyD Location: 262775-263219 bp Feature: domain Description: type_I_hlyD Location: 262775-263 219 bp Feature: domain Description: type_I_hlyD Location: 263258-263882 bp Feature: domain Description: type_I_hlyD Location: 263 258-263 882 bp Feature: gene Location: 263865-266045 bp Feature: domain Description: type_I_sec_LssB Location: 263925-265998 bp Feature: domain Description: type_I_sec_LssB Location: 263 925-265998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)