myRT

myRT report for GCA_002053175.1_ASM205317v1

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Seq: MYKU01000027.1 Salmonella enterica strain BCW_5098 NODE_27_length_58074_cov_12.9301, whole genome shotgun sequence (58074 bp)
Overview 1 RT 1: 43101-45437 bp Neighborhood of RT #1 [43101, 45437] HTH_XRE RVT-Retrons Feature: gene Location: 43101-43400 bp Feature: gene Location: 43437-43745 bp Feature: domain Description: HTH_XRE Location: 43449-43614 bp Feature: domain Description: HTH_XRE Location: 43449-4361 4 bp Feature: gene Location: 43723-44673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43903-44446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43903-44446 bp Feature: gene Location: 44813-45244 bp Feature: gene Location: 45243-45437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: MYKU01000042.1 Salmonella enterica strain BCW_5098 NODE_42_length_39267_cov_11.9698, whole genome shotgun sequence (39267 bp)
Overview 1 RT 1: 31131-35371 bp Neighborhood of RT #1 [31131, 35454] DUF4756 RVT-Retrons HTH_23 DDE_3 Feature: gene Location: 31131-31532 bp Feature: domain Description: DUF4756 Location: 31134-31530 bp Feature: domain Description: DUF4756 Location: 31134-31530 bp Feature: gene Location: 32051-33010 bp Feature: gene Location: 33300-34280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33483-34032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33483-34032 bp Feature: gene Location: 34423-34827 bp Feature: domain Description: HTH_23 Location: 34516-34642 bp Feature: domain Description: HTH_2 3 Location: 34516-34642 bp Feature: gene Location: 34834-35454 bp Feature: domain Description: DDE_3 Location: 34954-35371 bp Feature: domain Description: DDE_3 Location: 34954-35371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4756 (pfam15948), RVT-Retrons, HTH_23 (pfam13384), DDE_3 (pfam13358)

Seq: MYKU01000054.1 Salmonella enterica strain BCW_5098 NODE_54_length_25228_cov_5.70484, whole genome shotgun sequence (25228 bp)
Overview 1 RT 1: 1-5965 bp Neighborhood of RT #1 [1, 5979] RVT-UG8 RVT-UG3 AlpA Feature: gene Location: 1-198 bp Feature: gene Location: 424-711 bp Feature: gene Location: 1178-3190 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1754-2204 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1754-2204 bp Feature: gene Location: 3181-4455 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3469-3964 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 469-3 964 bp Feature: gene Location: 4778-5647 bp Feature: gene Location: 5770-5979 bp Feature: domain Description: AlpA Location: 5776-5965 bp Feature: domain Description: AlpA Location: 5776-5965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, AlpA (COG3311)