myRT

myRT report for GCA_002053215.1_ASM205321v1

Download annotations/find similar RTs

Seq: MYKV01000011.1 Salmonella enterica strain BCW_5097 NODE_11_length_49729_cov_5.4731, whole genome shotgun sequence (49729 bp)
Overview 1 RT 1: 1787-7701 bp Neighborhood of RT #1 [1787, 7701] HTH_22 RVT-UG8 RVT-UG3 Feature: gene Location: 1787-2035 bp Feature: domain Description: HTH_22 Location: 1793-1892 bp Feature: domain Description: HTH_22 Location: 1 793-1 892 bp Feature: gene Location: 2478-2765 bp Feature: gene Location: 3232-5244 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3808-4258 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3808-4258 bp Feature: gene Location: 5235-6509 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5523-6018 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5523-601 8 bp Feature: gene Location: 6647-6775 bp Feature: gene Location: 6832-7701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_22 (pfam13309), RVT-UG8, RVT-UG3

Seq: MYKV01000132.1 Salmonella enterica strain BCW_5097 NODE_132_length_11119_cov_4.50118, whole genome shotgun sequence (11119 bp)
Overview 1 RT 1: 1696-6017 bp Neighborhood of RT #1 [1696, 6019] DDE_3 HTH_23 RVT-Retrons DUF4756 Feature: gene Location: 1696-2316 bp Feature: domain Description: DDE_3 Location: 1816-2233 bp Feature: domain Description: DDE_3 Location: 1816-2 2 33 bp Feature: gene Location: 2323-2727 bp Feature: domain Description: HTH_23 Location: 2416-2542 bp Feature: domain Description: HTH_2 3 Location: 2 416-2 542 bp Feature: gene Location: 2870-3850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3053-3602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3053-3602 bp Feature: gene Location: 4140-5099 bp Feature: gene Location: 5618-6019 bp Feature: domain Description: DUF4756 Location: 5621-6017 bp Feature: domain Description: DUF4756 Location: 562 1-6017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), RVT-Retrons, DUF4756 (pfam15948)

Seq: MYKV01000056.1 Salmonella enterica strain BCW_5097 NODE_56_length_23366_cov_4.22203, whole genome shotgun sequence (23366 bp)
Overview 1 RT 1: 8466-10802 bp Neighborhood of RT #1 [8466, 10802] HTH_XRE RVT-Retrons Feature: gene Location: 8466-8765 bp Feature: gene Location: 8802-9110 bp Feature: domain Description: HTH_XRE Location: 8814-8979 bp Feature: domain Description: HTH_XRE Location: 8814-8979 bp Feature: gene Location: 9088-10038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9268-9811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9268-9811 bp Feature: gene Location: 10178-10609 bp Feature: gene Location: 10608-10802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons