myRT

myRT report for GCA_002053475.1_ASM205347v1

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Seq: MYLL01000132.1 Salmonella enterica strain BCW_5053 NODE_132_length_5386_cov_1.81803, whole genome shotgun sequence (5386 bp)
Overview 1 RT 1: 3-3782 bp Neighborhood of RT #1 [3, 3787] RVT_N RVT-GII Y2_Tnp umuC Feature: gene Location: 3-485 bp Feature: gene Location: 825-1439 bp Feature: domain Description: RVT_N Location: 879-1122 bp Feature: domain Description: RVT_N Location: 879-1 1 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 67-1 437 bp Feature: gene Location: 1769-3034 bp Feature: domain Description: Y2_Tnp Location: 2501-2789 bp Feature: domain Description: Y2_Tnp Location: 2501 -2789 bp Feature: gene Location: 3293-3787 bp Feature: domain Description: umuC Location: 3311-3782 bp Feature: domain Description: umuC Location: 331 1 -3782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Y2_Tnp (pfam04986), umuC (PRK03609)

Seq: MYLL01000039.1 Salmonella enterica strain BCW_5053 NODE_39_length_45884_cov_3.95786, whole genome shotgun sequence (45884 bp)
Overview 1 RT 1: 12666-15002 bp Neighborhood of RT #1 [12666, 15002] RVT-Retrons HTH_XRE Feature: gene Location: 12666-12860 bp Feature: gene Location: 12859-13290 bp Feature: gene Location: 13430-14380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13610-14153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13610-14153 bp Feature: gene Location: 14358-14666 bp Feature: domain Description: HTH_XRE Location: 14370-14535 bp Feature: domain Description: HTH_XRE Location: 14370-14535 bp Feature: gene Location: 14703-15002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: MYLL01000060.1 Salmonella enterica strain BCW_5053 NODE_60_length_29963_cov_2.12935, whole genome shotgun sequence (29963 bp)
Overview 1 RT 1: 7753-10959 bp Neighborhood of RT #1 [7753, 11024] DEDD_Tnp_IS110 RVT-GII GIIM PHA02517 Feature: gene Location: 7753-8139 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7798-8128 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7798-8128 bp Feature: gene Location: 8394-8597 bp Feature: gene Location: 8684-10207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8957-9689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8957-9689 bp Feature: domain Description: GIIM Note: maturase Location: 9764-9986 bp Feature: domain Description: GIIM Note: maturase Location: 9764-9986 bp Feature: gene Location: 10278-10577 bp Feature: gene Location: 10800-11024 bp Feature: domain Description: PHA02517 Location: 10806-10959 bp Feature: domain Description: PHA02517 Location: 10806-10959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MYLL01000081.1 Salmonella enterica strain BCW_5053 NODE_81_length_21279_cov_3.4699, whole genome shotgun sequence (21279 bp)
Overview 1 RT 1: 1693-6014 bp Neighborhood of RT #1 [1693, 6016] DDE_3 HTH_23 RVT-Retrons DUF4756 Feature: gene Location: 1693-2313 bp Feature: domain Description: DDE_3 Location: 1813-2230 bp Feature: domain Description: DDE_3 Location: 1813-2230 bp Feature: gene Location: 2320-2724 bp Feature: domain Description: HTH_23 Location: 2413-2539 bp Feature: domain Description: HTH_23 Location: 24 13-2539 bp Feature: gene Location: 2867-3847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3050-3599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3050-3599 bp Feature: gene Location: 4137-5096 bp Feature: gene Location: 5615-6016 bp Feature: domain Description: DUF4756 Location: 5618-6014 bp Feature: domain Description: DUF4 756 Location: 5618-6014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), RVT-Retrons, DUF4756 (pfam15948)

Seq: MYLL01000097.1 Salmonella enterica strain BCW_5053 NODE_97_length_14778_cov_1.95624, whole genome shotgun sequence (14778 bp)
Overview 1 RT 1: 1924-4450 bp Neighborhood of RT #1 [1924, 4450] PHA02517 RVT-GII Feature: gene Location: 1924-2403 bp Feature: domain Description: PHA02517 Location: 1984-2338 bp Feature: domain Description: PHA025 17 Location: 1984-2338 bp Feature: gene Location: 2695-2961 bp Feature: gene Location: 2994-3797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267-3648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267-3648 bp Feature: gene Location: 3891-4166 bp Feature: gene Location: 4193-4450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII