myRT

myRT report for GCA_002053555.1_ASM205355v1

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Seq: MYLU01000131.1 Salmonella enterica strain BCW_5040 NODE_131_length_10128_cov_29.3773, whole genome shotgun sequence (10128 bp)
Overview 1 RT 1: 3766-8087 bp Neighborhood of RT #1 [3766, 8089] DDE_3 HTH_23 RVT-Retrons DUF4756 Feature: gene Location: 3766-4386 bp Feature: domain Description: DDE_3 Location: 3886-4303 bp Feature: domain Description: DDE_3 Location: 3886-4303 bp Feature: gene Location: 4393-4797 bp Feature: domain Description: HTH_23 Location: 4486-4612 bp Feature: domain Description: HTH_23 Location: 4486-461 2 bp Feature: gene Location: 4940-5920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5123-5672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 23-5672 bp Feature: gene Location: 6210-7169 bp Feature: gene Location: 7688-8089 bp Feature: domain Description: DUF4756 Location: 7691-8087 bp Feature: domain Description: DUF4756 Location: 7691 -8087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_23 (pfam13384), RVT-Retrons, DUF4756 (pfam15948)

Seq: MYLU01000509.1 Salmonella enterica strain BCW_5040 NODE_509_length_2993_cov_20.8462, whole genome shotgun sequence (2993 bp)
Overview 1 RT 1: 157-2611 bp Neighborhood of RT #1 [157, 2611] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 157-1854 bp Feature: RT Description: RVT_N Location: 220-454 bp Feature: RT Description: RVT_N Location: 2 2 0-454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508-1153 bp Feature: domain Description: GIIM Note: maturase Location: 1207-1438 bp Feature: domain Description: GIIM Note: maturase Location: 12 07-1438 bp Feature: domain Description: HNHc Note: nucleases Location: 1648-1810 bp Feature: domain Description: HNHc Note: nucleases Location: 1648-1810 bp Feature: gene Location: 1992-2228 bp Feature: gene Location: 2285-2611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)