myRT

myRT report for GCA_002053845.1_ASM205384v1

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Seq: MYMU01000499.1 Salmonella enterica strain BCW_4952 NODE_499_length_3073_cov_5.21927, whole genome shotgun sequence (3073 bp)
Overview 1 RT 1: 3-2813 bp Neighborhood of RT #1 [3, 2851] RVT-Retrons PRK09692 Feature: gene Location: 3-278 bp Feature: gene Location: 412-1362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 511-1102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 1 -1 1 02 bp Feature: gene Location: 1349-2302 bp Feature: gene Location: 2639-2851 bp Feature: domain Description: PRK09692 Location: 2645-2813 bp Feature: domain Description: PRK09692 Location: 2645-281 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: MYMU01000051.1 Salmonella enterica strain BCW_4952 NODE_51_length_14502_cov_12.4054, whole genome shotgun sequence (14502 bp)
Overview 1 RT 1: 786-6676 bp Neighborhood of RT #1 [786, 6678] HTH_Hin_like HTH_Tnp_1 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 786-917 bp Feature: domain Description: HTH_Hin_like Location: 792-897 bp Feature: domain Description: HTH_Hin_like Location: 792 -897 bp Feature: gene Location: 1303-1740 bp Feature: domain Description: HTH_Tnp_1 Location: 1318-1435 bp Feature: domain Description: HTH_Tnp_1 Location: 1318-1435 bp Feature: gene Location: 1790-3421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2105-2702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 105-2 702 bp Feature: domain Description: TIR_2 Location: 3026-3386 bp Feature: domain Description: TIR_2 Location: 302 6-3386 bp Feature: gene Location: 4010-6343 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4100-4208 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4100-42 08 bp Feature: domain Description: COG3378 Location: 4826-6335 bp Feature: domain Description: COG3378 Location: 482 6-6335 bp Feature: gene Location: 6358-6678 bp Feature: domain Description: DUF5375 Location: 6361-6676 bp Feature: domain Description: DUF5375 Location: 6361-6676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), HTH_Tnp_1 (pfam01527), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: MYMU01000007.1 Salmonella enterica strain BCW_4952 NODE_7_length_31013_cov_10.8032, whole genome shotgun sequence (31013 bp)
Overview 1 RT 1: 152-3352 bp Neighborhood of RT #1 [152, 3534] RVT-UG11 5 Feature: gene Location: 152-916 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 275-728 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 275-728 bp Feature: gene Location: 1537-1704 bp Feature: gene Location: 1834-3534 bp Feature: domain Description: 5 Location: 3058-3352 bp Feature: domain Description: 5 Location: 3 058-3 3 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, 5 (PHA02596)